Analysis of interatomic Contacts of Structural Units in PDB entry:
5O6E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O6E entry

There are 4 chains in PDB entry 5O6E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 236THR 763
B
 GLY 236LEU 764
C
 T 1 T 6
D
 T 1 T 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 49 helices in PDB entry 5O6E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
238 248Right-handed alpha
Helix 2
AA2
A
249 251Right-handed 310
Helix 3
AA3
A
263 280Right-handed alpha
Helix 4
AA4
A
290 297Right-handed alpha
Helix 5
AA5
A
302 307Right-handed alpha
Helix 6
AA6
A
314 324Right-handed alpha
Helix 7
AA7
A
325 335Right-handed alpha
Helix 8
AA8
A
342 346Right-handed 310
Helix 9
AA9
A
347 363Right-handed alpha
Helix 10
AB1
A
395 398Right-handed 310
Helix 11
AB2
A
399 406Right-handed alpha
Helix 12
AB3
A
421 433Right-handed alpha
Helix 13
AB4
A
437 446Right-handed alpha
Helix 14
AB5
A
447 449Right-handed 310
Helix 15
AB6
A
464 477Right-handed alpha
Helix 16
AB7
A
501 506Right-handed alpha
Helix 17
AB8
A
544 557Right-handed alpha
Helix 18
AB9
A
562 570Right-handed alpha
Helix 19
AC1
A
572 581Right-handed alpha
Helix 20
AC2
A
615 623Right-handed 310
Helix 21
AC3
A
638 649Right-handed alpha
Helix 22
AC4
A
704 708Right-handed alpha
Helix 23
AC5
A
726 733Right-handed alpha
Helix 24
AC6
A
747 751Right-handed 310
Helix 25
AC7
A
754 761Right-handed alpha
Helix 26
AC8
B
238 250Right-handed alpha
Helix 27
AC9
B
263 280Right-handed alpha
Helix 28
AD1
B
290 297Right-handed alpha
Helix 29
AD2
B
302 307Right-handed alpha
Helix 30
AD3
B
314 324Right-handed alpha
Helix 31
AD4
B
325 335Right-handed alpha
Helix 32
AD5
B
342 346Right-handed 310
Helix 33
AD6
B
347 363Right-handed alpha
Helix 34
AD7
B
395 398Right-handed 310
Helix 35
AD8
B
399 406Right-handed alpha
Helix 36
AD9
B
421 433Right-handed alpha
Helix 37
AE1
B
437 447Right-handed alpha
Helix 38
AE2
B
464 478Right-handed alpha
Helix 39
AE3
B
498 503Right-handed alpha
Helix 40
AE4
B
544 557Right-handed alpha
Helix 41
AE5
B
562 571Right-handed alpha
Helix 42
AE6
B
575 580Right-handed alpha
Helix 43
AE7
B
615 620Right-handed 310
Helix 44
AE8
B
635 637Right-handed 310
Helix 45
AE9
B
638 649Right-handed alpha
Helix 46
AF1
B
704 708Right-handed alpha
Helix 47
AF2
B
720 722Right-handed 310
Helix 48
AF3
B
726 733Right-handed alpha
Helix 49
AF4
B
754 761Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 5O6E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 301first strand
Strand 2
A
284 288parallel
Strand 3
A
337 341parallel
Strand 4
A
372 375parallel
Strand 5
A
254 257parallel
Strand 6
A
410 411parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
701 703first strand
Strand 2
A
459 462parallel
Strand 3
A
715 718parallel
Strand 4
A
741 744parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 487first strand
Strand 2
A
512 515anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 492first strand
Strand 2
A
689 693anti-parallel
Strand 3
A
676 680anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
668 672first strand
Strand 2
A
656 662anti-parallel
Strand 3
A
536 543anti-parallel
Strand 4
A
520 523anti-parallel
Strand 5
A
696 698anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 301first strand
Strand 2
B
284 288parallel
Strand 3
B
337 341parallel
Strand 4
B
372 376parallel
Strand 5
B
254 258parallel
Strand 6
B
409 412parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
701 703first strand
Strand 2
B
459 462parallel
Strand 3
B
715 718parallel
Strand 4
B
741 744parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
484 487first strand
Strand 2
B
512 515anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 492first strand
Strand 2
B
687 693anti-parallel
Strand 3
B
676 681anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
668 672first strand
Strand 2
B
656 662anti-parallel
Strand 3
B
536 543anti-parallel
Strand 4
B
520 523anti-parallel
Strand 5
B
696 698anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il