Analysis of interatomic Contacts of Structural Units in PDB entry:
5O6T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O6T entry

There are 4 chains in PDB entry 5O6T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 434SER 497
B
 ILE 435SER 497
C
 SER 0HIS 74
D
 SER 0PHE 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 5O6T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
436 448Right-handed alpha
Helix 2
AA2
A
471 476Right-handed alpha
Helix 3
AA3
B
436 448Right-handed alpha
Helix 4
AA4
B
471 476Right-handed alpha
Helix 5
AA5
C
22 35Right-handed alpha
Helix 6
AA6
C
37 39Right-handed 310
Helix 7
AA7
C
56 60Right-handed 310
Helix 8
AA8
D
22 35Right-handed alpha
Helix 9
AA9
D
37 39Right-handed 310
Helix 10
AB1
D
56 60Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 5O6T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 463first strand
Strand 2
A
490 493anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
468 470first strand
Strand 2
B
460 463anti-parallel
Strand 3
B
490 493anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 17first strand
Strand 2
C
1 9anti-parallel
Strand 3
D
66 71parallel
Strand 4
D
41 45anti-parallel
Strand 5
D
48 49anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 17first strand
Strand 2
D
1 9anti-parallel
Strand 3
C
66 71parallel
Strand 4
C
41 45anti-parallel
Strand 5
C
48 49anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il