Analysis of interatomic Contacts of Structural Units in PDB entry:
5O6U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O6U entry

There are 8 chains in PDB entry 5O6U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	C 1	C 43
B	ASN 2	PHE 183
C	MET 1	LYS 315
D	MET 1	LYS 315
E	MET 1	LYS 315
F	MET 1	LEU 336
H	C 2	T 22
I	G 1	G 27

There are 40 helices in PDB entry 5O6U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	16	36	Right-handed alpha
Helix 2	AA2	B	60	71	Right-handed alpha
Helix 3	AA3	B	74	78	Right-handed 310
Helix 4	AA4	B	105	115	Right-handed alpha
Helix 5	AA5	B	119	133	Right-handed alpha
Helix 6	AA6	C	81	91	Right-handed alpha
Helix 7	AA7	C	106	111	Right-handed alpha
Helix 8	AA8	C	111	116	Right-handed alpha
Helix 9	AA9	C	179	183	Right-handed alpha
Helix 10	AB1	C	199	218	Right-handed alpha
Helix 11	AB2	C	248	265	Right-handed alpha
Helix 12	AB3	C	291	296	Right-handed alpha
Helix 13	AB4	D	81	90	Right-handed alpha
Helix 14	AB5	D	96	100	Right-handed 310
Helix 15	AB6	D	101	110	Right-handed alpha
Helix 16	AB7	D	111	116	Right-handed alpha
Helix 17	AB8	D	179	183	Right-handed alpha
Helix 18	AB9	D	201	218	Right-handed alpha
Helix 19	AC1	D	248	265	Right-handed alpha
Helix 20	AC2	E	81	90	Right-handed alpha
Helix 21	AC3	E	95	100	Right-handed 310
Helix 22	AC4	E	104	110	Right-handed alpha
Helix 23	AC5	E	111	116	Right-handed alpha
Helix 24	AC6	E	179	183	Right-handed alpha
Helix 25	AC7	E	201	218	Right-handed alpha
Helix 26	AC8	E	248	265	Right-handed alpha
Helix 27	AC9	E	291	296	Right-handed alpha
Helix 28	AD1	F	34	40	Right-handed alpha
Helix 29	AD2	F	50	62	Right-handed alpha
Helix 30	AD3	F	67	73	Right-handed alpha
Helix 31	AD4	F	84	87	Right-handed 310
Helix 32	AD5	F	124	129	Right-handed alpha
Helix 33	AD6	F	131	137	Right-handed alpha
Helix 34	AD7	F	138	141	Right-handed 310
Helix 35	AD8	F	142	151	Right-handed alpha
Helix 36	AD9	F	163	176	Right-handed alpha
Helix 37	AE1	F	183	197	Right-handed alpha
Helix 38	AE2	F	210	230	Right-handed alpha
Helix 39	AE3	F	251	259	Right-handed alpha
Helix 40	AE4	F	302	317	Right-handed alpha

There are 28 sheets in PDB entry 5O6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	54	59	anti-parallel
Strand 3	B	3	9	anti-parallel
Strand 4	B	80	82	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	54	59	anti-parallel
Strand 3	B	3	9	anti-parallel
Strand 4	B	86	87	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	95	first strand
Strand 2	B	180	182	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	100	first strand
Strand 2	B	151	157	anti-parallel
Strand 3	B	139	142	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	80	first strand
Strand 2	C	137	139	anti-parallel
Strand 3	C	168	178	anti-parallel
Strand 4	C	132	134	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	80	first strand
Strand 2	C	137	139	anti-parallel
Strand 3	C	168	178	anti-parallel
Strand 4	C	9	19	anti-parallel
Strand 5	C	274	285	anti-parallel
Strand 6	C	267	269	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	121	first strand
Strand 2	C	126	128	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	165	166	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	186	first strand
Strand 2	C	242	247	anti-parallel
Strand 3	C	225	233	anti-parallel
Strand 4	C	312	314	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	80	first strand
Strand 2	D	137	139	anti-parallel
Strand 3	D	168	178	anti-parallel
Strand 4	D	132	134	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	80	first strand
Strand 2	D	137	139	anti-parallel
Strand 3	D	168	178	anti-parallel
Strand 4	D	9	19	anti-parallel
Strand 5	D	273	285	anti-parallel
Strand 6	D	267	270	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	42	44	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	31	first strand
Strand 2	D	37	38	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	56	first strand
Strand 2	D	63	65	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	121	first strand
Strand 2	D	126	128	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	150	first strand
Strand 2	D	160	166	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	186	first strand
Strand 2	D	241	247	anti-parallel
Strand 3	D	225	233	anti-parallel
Strand 4	D	312	314	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	80	first strand
Strand 2	E	137	139	anti-parallel
Strand 3	E	168	178	anti-parallel
Strand 4	E	132	134	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	80	first strand
Strand 2	E	137	139	anti-parallel
Strand 3	E	168	178	anti-parallel
Strand 4	E	9	19	anti-parallel
Strand 5	E	273	285	anti-parallel
Strand 6	E	267	270	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	27	first strand
Strand 2	E	42	44	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	31	first strand
Strand 2	E	37	38	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	120	first strand
Strand 2	E	127	128	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	150	first strand
Strand 2	E	160	166	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	186	first strand
Strand 2	E	242	247	anti-parallel
Strand 3	E	225	233	anti-parallel
Strand 4	E	312	313	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	100	first strand
Strand 2	F	282	299	anti-parallel
Strand 3	F	273	278	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	100	first strand
Strand 2	F	282	299	anti-parallel
Strand 3	F	2	11	anti-parallel
Strand 4	F	328	335	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	103	105	first strand
Strand 2	F	269	271	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	120	first strand
Strand 2	F	260	261	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O6U

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O6U