Analysis of interatomic Contacts of Structural Units in PDB entry:
5O6V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O6V entry

There are 10 chains in PDB entry 5O6V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	LEU 492
B	SER 1	LEU 492
C	SER 1	LEU 492
D	VAL 2	PRO 72
E	VAL 2	PRO 72
F	VAL 2	PRO 72
H	GLU 1	LYS 212
I	GLU 1	LYS 212
L	ASP 1	SER 208
M	ASP 1	SER 208

There are 54 helices in PDB entry 5O6V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	5	Right-handed 310
Helix 2	AA2	A	82	86	Right-handed 310
Helix 3	AA3	A	193	196	Right-handed 310
Helix 4	AA4	A	216	221	Right-handed alpha
Helix 5	AA5	A	237	240	Right-handed 310
Helix 6	AA6	A	260	268	Right-handed alpha
Helix 7	AA7	A	399	413	Right-handed alpha
Helix 8	AA8	A	414	420	Right-handed alpha
Helix 9	AA9	A	431	448	Right-handed alpha
Helix 10	AB1	A	453	470	Right-handed alpha
Helix 11	AB2	A	474	479	Right-handed 310
Helix 12	AB3	A	480	487	Right-handed alpha
Helix 13	AB4	A	488	492	Right-handed 310
Helix 14	AB5	B	2	6	Right-handed 310
Helix 15	AB6	B	82	87	Right-handed 310
Helix 16	AB7	B	177	179	Right-handed 310
Helix 17	AB8	B	217	221	Right-handed alpha
Helix 18	AB9	B	260	267	Right-handed alpha
Helix 19	AC1	B	397	412	Right-handed alpha
Helix 20	AC2	B	414	420	Right-handed alpha
Helix 21	AC3	B	431	446	Right-handed alpha
Helix 22	AC4	B	453	470	Right-handed alpha
Helix 23	AC5	B	477	489	Right-handed alpha
Helix 24	AC6	C	2	6	Right-handed 310
Helix 25	AC7	C	82	86	Right-handed 310
Helix 26	AC8	C	193	195	Right-handed 310
Helix 27	AC9	C	217	222	Right-handed alpha
Helix 28	AD1	C	397	412	Right-handed alpha
Helix 29	AD2	C	415	419	Right-handed 310
Helix 30	AD3	C	431	448	Right-handed alpha
Helix 31	AD4	C	453	470	Right-handed alpha
Helix 32	AD5	C	475	477	Right-handed 310
Helix 33	AD6	C	478	489	Right-handed alpha
Helix 34	AD7	D	20	23	Right-handed 310
Helix 35	AD8	D	24	38	Right-handed alpha
Helix 36	AD9	D	39	46	Right-handed alpha
Helix 37	AE1	D	46	51	Right-handed alpha
Helix 38	AE2	D	60	71	Right-handed alpha
Helix 39	AE3	E	25	38	Right-handed alpha
Helix 40	AE4	E	39	46	Right-handed alpha
Helix 41	AE5	E	46	52	Right-handed alpha
Helix 42	AE6	E	58	70	Right-handed alpha
Helix 43	AE7	F	26	39	Right-handed alpha
Helix 44	AE8	F	39	46	Right-handed alpha
Helix 45	AE9	F	47	53	Right-handed alpha
Helix 46	AF1	F	56	58	Right-handed 310
Helix 47	AF2	F	59	66	Right-handed alpha
Helix 48	AF3	H	52	56	Right-handed 310
Helix 49	AF4	H	87	91	Right-handed 310
Helix 50	AF5	H	193	198	Right-handed alpha
Helix 51	AF6	L	79	83	Right-handed 310
Helix 52	AF7	L	183	187	Right-handed alpha
Helix 53	AF8	M	79	83	Right-handed 310
Helix 54	AF9	M	182	187	Right-handed alpha

There are 58 sheets in PDB entry 5O6V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	30	35	parallel
Strand 3	A	38	49	anti-parallel
Strand 4	A	138	145	anti-parallel
Strand 5	A	161	165	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	291	293	anti-parallel
Strand 3	A	181	185	anti-parallel
Strand 4	A	171	175	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	287	288	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	59	first strand
Strand 2	A	227	228	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	120	121	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	72	first strand
Strand 2	A	112	118	anti-parallel
Strand 3	A	90	96	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	198	201	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	213	first strand
Strand 2	A	273	274	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	247	first strand
Strand 2	A	252	256	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	277	first strand
Strand 2	A	280	281	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	306	first strand
Strand 2	A	338	339	parallel
Strand 3	A	363	364	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	320	first strand
Strand 2	A	325	332	anti-parallel
Strand 3	A	371	375	anti-parallel
Strand 4	A	356	357	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	345	first strand
Strand 2	A	379	385	anti-parallel
Strand 3	A	391	394	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	14	first strand
Strand 2	B	30	35	parallel
Strand 3	B	41	50	anti-parallel
Strand 4	B	137	145	anti-parallel
Strand 5	B	161	165	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	22	first strand
Strand 2	B	289	293	anti-parallel
Strand 3	B	181	187	anti-parallel
Strand 4	B	171	175	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	227	228	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	64	first strand
Strand 2	B	120	121	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	72	first strand
Strand 2	B	111	118	anti-parallel
Strand 3	B	90	97	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	197	201	anti-parallel
Strand 3	B	215	216	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	213	first strand
Strand 2	B	273	274	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	244	first strand
Strand 2	B	254	256	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	277	first strand
Strand 2	B	280	281	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	320	first strand
Strand 2	B	325	330	anti-parallel
Strand 3	B	371	375	anti-parallel
Strand 4	B	356	357	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	345	first strand
Strand 2	B	379	385	anti-parallel
Strand 3	B	391	394	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	31	35	parallel
Strand 3	C	41	49	anti-parallel
Strand 4	C	138	144	anti-parallel
Strand 5	C	161	165	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	287	297	anti-parallel
Strand 3	C	180	187	anti-parallel
Strand 4	C	172	175	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	59	first strand
Strand 2	C	227	228	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	120	121	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	72	first strand
Strand 2	C	110	116	anti-parallel
Strand 3	C	92	98	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	198	first strand
Strand 2	C	215	216	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	243	first strand
Strand 2	C	255	256	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	277	first strand
Strand 2	C	280	283	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	320	first strand
Strand 2	C	325	331	anti-parallel
Strand 3	C	374	375	anti-parallel
Strand 4	C	356	357	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	363	364	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	345	first strand
Strand 2	C	382	385	anti-parallel
Strand 3	C	388	390	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	380	first strand
Strand 2	C	393	394	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	78	82	anti-parallel
Strand 4	H	69	73	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	49	first strand
Strand 2	H	36	40	anti-parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	107	110	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	49	first strand
Strand 2	H	36	40	anti-parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	114	116	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	143	144	first strand
Strand 2	H	189	190	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	148	152	first strand
Strand 2	H	182	185	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	161	first strand
Strand 2	H	202	205	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	6	7	first strand
Strand 2	I	17	22	anti-parallel
Strand 3	I	78	84	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	114	118	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	33	39	anti-parallel
Strand 5	I	45	53	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	114	118	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	107	110	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	149	152	first strand
Strand 2	I	182	184	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	158	161	first strand
Strand 2	I	202	205	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	86	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	21	first strand
Strand 2	L	73	75	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	33	35	first strand
Strand 2	L	88	90	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	129	130	first strand
Strand 2	L	181	182	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	133	139	first strand
Strand 2	L	173	178	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	144	150	first strand
Strand 2	L	192	198	anti-parallel

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There are 3 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	85	86	anti-parallel

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There are 3 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	20	21	first strand
Strand 2	M	71	74	anti-parallel
Strand 3	M	65	66	anti-parallel

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There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	33	35	first strand
Strand 2	M	88	90	anti-parallel

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There are 3 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	114	115	first strand
Strand 2	M	132	139	anti-parallel
Strand 3	M	173	179	anti-parallel

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There are 2 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	144	150	first strand
Strand 2	M	192	198	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O6V

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O6V