Analysis of interatomic Contacts of Structural Units in PDB entry:
5O6Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O6Y entry

There are 7 chains in PDB entry 5O6Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 53	ARG 266
B	TRP 53	PRO 170
B	TYR 172	ARG 266
C	TRP 53	PRO 170
C	TYR 172	ARG 266
D	TRP 53	PRO 170
D	TYR 172	ARG 266

There are 49 helices in PDB entry 5O6Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	62	Right-handed alpha
Helix 2	AA2	A	88	98	Right-handed alpha
Helix 3	AA3	A	107	114	Right-handed alpha
Helix 4	AA4	A	114	124	Right-handed alpha
Helix 5	AA5	A	137	141	Right-handed 310
Helix 6	AA6	A	142	162	Right-handed alpha
Helix 7	AA7	A	170	174	Right-handed 310
Helix 8	AA8	A	176	186	Right-handed alpha
Helix 9	AA9	A	198	202	Right-handed 310
Helix 10	AB1	A	204	214	Right-handed alpha
Helix 11	AB2	A	232	238	Right-handed alpha
Helix 12	AB3	A	238	249	Right-handed alpha
Helix 13	AB4	A	255	260	Right-handed alpha
Helix 14	AB5	B	54	62	Right-handed alpha
Helix 15	AB6	B	86	98	Right-handed alpha
Helix 16	AB7	B	107	114	Right-handed alpha
Helix 17	AB8	B	114	124	Right-handed alpha
Helix 18	AB9	B	137	141	Right-handed 310
Helix 19	AC1	B	142	162	Right-handed alpha
Helix 20	AC2	B	170	174	Right-handed 310
Helix 21	AC3	B	176	186	Right-handed alpha
Helix 22	AC4	B	198	202	Right-handed 310
Helix 23	AC5	B	204	216	Right-handed alpha
Helix 24	AC6	B	232	249	Right-handed alpha
Helix 25	AC7	B	255	260	Right-handed alpha
Helix 26	AC8	C	57	62	Right-handed alpha
Helix 27	AC9	C	86	98	Right-handed alpha
Helix 28	AD1	C	107	114	Right-handed alpha
Helix 29	AD2	C	114	124	Right-handed alpha
Helix 30	AD3	C	142	162	Right-handed alpha
Helix 31	AD4	C	170	174	Right-handed 310
Helix 32	AD5	C	176	186	Right-handed alpha
Helix 33	AD6	C	198	202	Right-handed 310
Helix 34	AD7	C	204	214	Right-handed alpha
Helix 35	AD8	C	232	238	Right-handed alpha
Helix 36	AD9	C	238	248	Right-handed alpha
Helix 37	AE1	C	255	261	Right-handed alpha
Helix 38	AE2	D	57	62	Right-handed alpha
Helix 39	AE3	D	86	98	Right-handed alpha
Helix 40	AE4	D	107	114	Right-handed alpha
Helix 41	AE5	D	114	124	Right-handed alpha
Helix 42	AE6	D	137	141	Right-handed 310
Helix 43	AE7	D	142	162	Right-handed alpha
Helix 44	AE8	D	170	174	Right-handed 310
Helix 45	AE9	D	176	186	Right-handed alpha
Helix 46	AF1	D	198	202	Right-handed 310
Helix 47	AF2	D	204	214	Right-handed alpha
Helix 48	AF3	D	232	248	Right-handed alpha
Helix 49	AF4	D	255	260	Right-handed alpha

There are 12 sheets in PDB entry 5O6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	189	191	parallel
Strand 3	A	167	168	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	130	first strand
Strand 2	A	103	106	parallel
Strand 3	A	74	80	parallel
Strand 4	A	221	225	parallel
Strand 5	A	195	196	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	130	first strand
Strand 2	A	103	106	parallel
Strand 3	A	74	80	parallel
Strand 4	A	252	253	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	189	191	parallel
Strand 3	B	167	168	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	103	106	parallel
Strand 3	B	74	82	parallel
Strand 4	B	221	225	parallel
Strand 5	B	195	196	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	103	106	parallel
Strand 3	B	74	82	parallel
Strand 4	B	252	253	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	189	191	parallel
Strand 3	C	167	168	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	130	first strand
Strand 2	C	103	106	parallel
Strand 3	C	74	82	parallel
Strand 4	C	221	225	parallel
Strand 5	C	195	196	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	130	first strand
Strand 2	C	103	106	parallel
Strand 3	C	74	82	parallel
Strand 4	C	252	253	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	65	first strand
Strand 2	D	189	191	parallel
Strand 3	D	167	168	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	130	first strand
Strand 2	D	103	106	parallel
Strand 3	D	74	82	parallel
Strand 4	D	221	225	parallel
Strand 5	D	195	196	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	130	first strand
Strand 2	D	103	106	parallel
Strand 3	D	74	82	parallel
Strand 4	D	252	253	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O6Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O6Y