Analysis of interatomic Contacts of Structural Units in PDB entry:
5O71


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O71 entry

There is 1 chain in PDB entry 5O71 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 159ALA 708
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5O71. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
178 190Right-handed alpha
Helix 2
AA2
A
190 199Right-handed alpha
Helix 3
AA3
A
217 235Right-handed alpha
Helix 4
AA4
A
242 252Right-handed alpha
Helix 5
AA5
A
265 282Right-handed alpha
Helix 6
AA6
A
283 286Right-handed 310
Helix 7
AA7
A
293 300Right-handed alpha
Helix 8
AA8
A
332 339Right-handed alpha
Helix 9
AA9
A
402 407Right-handed 310
Helix 10
AB1
A
408 438Right-handed alpha
Helix 11
AB2
A
447 460Right-handed alpha
Helix 12
AB3
A
541 580Right-handed alpha
Helix 13
AB4
A
632 641Right-handed alpha
Helix 14
AB5
A
659 665Right-handed alpha
Helix 15
AB6
A
682 705Right-handed alpha
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There are 5 sheets in PDB entry 5O71. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
239 240parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 320first strand
Strand 2
A
301 307anti-parallel
Strand 3
A
358 365anti-parallel
Strand 4
A
342 344anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 326first strand
Strand 2
A
369 375parallel
Strand 3
A
648 656anti-parallel
Strand 4
A
590 601anti-parallel
Strand 5
A
398 400anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 326first strand
Strand 2
A
369 375parallel
Strand 3
A
648 656anti-parallel
Strand 4
A
590 601anti-parallel
Strand 5
A
606 613anti-parallel
Strand 6
A
620 624anti-parallel
Strand 7
A
627 630anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 379first strand
Strand 2
A
386 388anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il