Analysis of interatomic Contacts of Structural Units in PDB entry:
5O78

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O78 entry

There are 3 chains in PDB entry 5O78 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 7	PHE 337
B	ASN 7	PHE 337
C	ASN 7	PHE 337

There are 18 helices in PDB entry 5O78. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	84	86	Right-handed 310
Helix 2	AA2	A	98	103	Right-handed alpha
Helix 3	AA3	A	137	141	Right-handed 310
Helix 4	AA4	A	160	164	Right-handed 310
Helix 5	AA5	A	195	200	Right-handed 310
Helix 6	AA6	A	315	322	Right-handed alpha
Helix 7	AA7	B	84	86	Right-handed 310
Helix 8	AA8	B	98	104	Right-handed alpha
Helix 9	AA9	B	137	141	Right-handed 310
Helix 10	AB1	B	160	164	Right-handed 310
Helix 11	AB2	B	195	200	Right-handed 310
Helix 12	AB3	B	315	322	Right-handed alpha
Helix 13	AB4	C	84	86	Right-handed 310
Helix 14	AB5	C	98	103	Right-handed alpha
Helix 15	AB6	C	137	141	Right-handed 310
Helix 16	AB7	C	160	164	Right-handed 310
Helix 17	AB8	C	195	200	Right-handed 310
Helix 18	AB9	C	315	322	Right-handed alpha

There are 3 sheets in PDB entry 5O78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	A	9	24	anti-parallel
Strand 3	A	328	336	anti-parallel
Strand 4	A	301	310	anti-parallel
Strand 5	A	282	298	anti-parallel
Strand 6	A	258	270	anti-parallel
Strand 7	A	242	252	anti-parallel
Strand 8	A	219	229	anti-parallel
Strand 9	A	204	216	anti-parallel
Strand 10	A	181	191	anti-parallel
Strand 11	A	168	176	anti-parallel
Strand 12	A	145	152	anti-parallel
Strand 13	A	126	135	anti-parallel
Strand 14	A	88	95	anti-parallel
Strand 15	A	72	82	anti-parallel
Strand 16	A	52	62	anti-parallel
Strand 17	A	36	46	anti-parallel
Strand 18	A	9	24	anti-parallel

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There are 18 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	9	24	anti-parallel
Strand 3	B	328	336	anti-parallel
Strand 4	B	301	310	anti-parallel
Strand 5	B	282	298	anti-parallel
Strand 6	B	258	270	anti-parallel
Strand 7	B	242	252	anti-parallel
Strand 8	B	219	229	anti-parallel
Strand 9	B	204	216	anti-parallel
Strand 10	B	181	191	anti-parallel
Strand 11	B	168	176	anti-parallel
Strand 12	B	145	152	anti-parallel
Strand 13	B	126	135	anti-parallel
Strand 14	B	88	95	anti-parallel
Strand 15	B	72	82	anti-parallel
Strand 16	B	52	62	anti-parallel
Strand 17	B	36	46	anti-parallel
Strand 18	B	9	24	anti-parallel

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There are 18 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	33	first strand
Strand 2	C	9	24	anti-parallel
Strand 3	C	328	336	anti-parallel
Strand 4	C	301	310	anti-parallel
Strand 5	C	282	298	anti-parallel
Strand 6	C	258	270	anti-parallel
Strand 7	C	242	252	anti-parallel
Strand 8	C	219	229	anti-parallel
Strand 9	C	204	216	anti-parallel
Strand 10	C	181	191	anti-parallel
Strand 11	C	168	176	anti-parallel
Strand 12	C	145	152	anti-parallel
Strand 13	C	126	135	anti-parallel
Strand 14	C	88	95	anti-parallel
Strand 15	C	72	82	anti-parallel
Strand 16	C	52	62	anti-parallel
Strand 17	C	36	46	anti-parallel
Strand 18	C	9	24	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O78

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O78