Analysis of interatomic Contacts of Structural Units in PDB entry:
5O7O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O7O entry

There are 4 chains in PDB entry 5O7O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	ASN 190
B	THR 5	MET 191
C	GLN 198	ARG 784
D	ALA 199	ARG 784

There are 71 helices in PDB entry 5O7O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	85	93	Right-handed 310
Helix 2	AA2	A	115	131	Right-handed alpha
Helix 3	AA3	A	145	155	Right-handed alpha
Helix 4	AA4	A	176	189	Right-handed alpha
Helix 5	AA5	B	85	92	Right-handed 310
Helix 6	AA6	B	115	131	Right-handed alpha
Helix 7	AA7	B	145	155	Right-handed alpha
Helix 8	AA8	B	176	189	Right-handed alpha
Helix 9	AA9	C	204	226	Right-handed alpha
Helix 10	AB1	C	266	269	Right-handed 310
Helix 11	AB2	C	281	289	Right-handed alpha
Helix 12	AB3	C	296	320	Right-handed alpha
Helix 13	AB4	C	324	329	Right-handed alpha
Helix 14	AB5	C	332	340	Right-handed alpha
Helix 15	AB6	C	357	365	Right-handed alpha
Helix 16	AB7	C	393	403	Right-handed alpha
Helix 17	AB8	C	403	417	Right-handed alpha
Helix 18	AB9	C	420	422	Right-handed 310
Helix 19	AC1	C	430	437	Right-handed alpha
Helix 20	AC2	C	437	442	Right-handed alpha
Helix 21	AC3	C	442	448	Right-handed alpha
Helix 22	AC4	C	497	503	Right-handed alpha
Helix 23	AC5	C	503	517	Right-handed alpha
Helix 24	AC6	C	518	524	Right-handed alpha
Helix 25	AC7	C	539	546	Right-handed alpha
Helix 26	AC8	C	550	554	Right-handed 310
Helix 27	AC9	C	578	582	Right-handed 310
Helix 28	AD1	C	589	599	Right-handed alpha
Helix 29	AD2	C	601	613	Right-handed alpha
Helix 30	AD3	C	613	625	Right-handed alpha
Helix 31	AD4	C	666	673	Right-handed 310
Helix 32	AD5	C	682	687	Right-handed alpha
Helix 33	AD6	C	693	704	Right-handed alpha
Helix 34	AD7	C	708	726	Right-handed alpha
Helix 35	AD8	C	727	729	Right-handed 310
Helix 36	AD9	C	730	737	Right-handed alpha
Helix 37	AE1	C	748	756	Right-handed alpha
Helix 38	AE2	C	780	784	Right-handed 310
Helix 39	AE3	D	204	226	Right-handed alpha
Helix 40	AE4	D	266	269	Right-handed 310
Helix 41	AE5	D	281	289	Right-handed alpha
Helix 42	AE6	D	289	294	Right-handed alpha
Helix 43	AE7	D	296	320	Right-handed alpha
Helix 44	AE8	D	324	329	Right-handed alpha
Helix 45	AE9	D	332	340	Right-handed alpha
Helix 46	AF1	D	357	365	Right-handed alpha
Helix 47	AF2	D	393	403	Right-handed alpha
Helix 48	AF3	D	403	417	Right-handed alpha
Helix 49	AF4	D	420	422	Right-handed 310
Helix 50	AF5	D	430	437	Right-handed alpha
Helix 51	AF6	D	437	442	Right-handed alpha
Helix 52	AF7	D	442	448	Right-handed alpha
Helix 53	AF8	D	497	503	Right-handed alpha
Helix 54	AF9	D	503	518	Right-handed alpha
Helix 55	AG1	D	518	524	Right-handed alpha
Helix 56	AG2	D	539	546	Right-handed alpha
Helix 57	AG3	D	550	554	Right-handed 310
Helix 58	AG4	D	563	568	Right-handed 310
Helix 59	AG5	D	578	582	Right-handed 310
Helix 60	AG6	D	589	599	Right-handed alpha
Helix 61	AG7	D	601	613	Right-handed alpha
Helix 62	AG8	D	613	625	Right-handed alpha
Helix 63	AG9	D	666	671	Right-handed 310
Helix 64	AH1	D	677	681	Right-handed 310
Helix 65	AH2	D	682	687	Right-handed alpha
Helix 66	AH3	D	693	704	Right-handed alpha
Helix 67	AH4	D	708	726	Right-handed alpha
Helix 68	AH5	D	727	729	Right-handed 310
Helix 69	AH6	D	730	737	Right-handed alpha
Helix 70	AH7	D	748	755	Right-handed alpha
Helix 71	AH8	D	780	784	Right-handed 310

There are 17 sheets in PDB entry 5O7O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	11	first strand
Strand 2	A	14	20	anti-parallel
Strand 3	A	66	71	anti-parallel
Strand 4	A	74	83	anti-parallel
Strand 5	A	99	106	anti-parallel
Strand 6	A	136	139	parallel
Strand 7	A	169	175	anti-parallel
Strand 8	A	158	164	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	B	14	20	anti-parallel
Strand 3	B	66	71	anti-parallel
Strand 4	B	74	83	anti-parallel
Strand 5	B	99	106	anti-parallel
Strand 6	B	136	139	parallel
Strand 7	B	169	175	anti-parallel
Strand 8	B	158	164	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	233	first strand
Strand 2	C	239	242	anti-parallel
Strand 3	C	248	252	anti-parallel
Strand 4	C	270	273	anti-parallel
Strand 5	C	276	277	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	257	first strand
Strand 2	C	261	264	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	424	429	first strand
Strand 2	C	375	380	anti-parallel
Strand 3	C	451	456	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	384	388	first strand
Strand 2	C	531	537	anti-parallel
Strand 3	C	557	561	anti-parallel
Strand 4	C	480	483	anti-parallel
Strand 5	C	469	472	anti-parallel
Strand 6	C	461	463	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	488	489	first strand
Strand 2	C	492	493	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	527	528	first strand
Strand 2	C	643	649	parallel
Strand 3	C	635	640	anti-parallel
Strand 4	C	572	576	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	626	627	first strand
Strand 2	C	657	658	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	743	747	first strand
Strand 2	C	772	777	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	233	first strand
Strand 2	D	238	242	anti-parallel
Strand 3	D	248	257	anti-parallel
Strand 4	D	261	264	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	233	first strand
Strand 2	D	238	242	anti-parallel
Strand 3	D	248	257	anti-parallel
Strand 4	D	270	273	anti-parallel
Strand 5	D	276	277	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	429	first strand
Strand 2	D	375	380	anti-parallel
Strand 3	D	451	456	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	384	388	first strand
Strand 2	D	531	537	anti-parallel
Strand 3	D	557	561	anti-parallel
Strand 4	D	480	483	anti-parallel
Strand 5	D	469	472	anti-parallel
Strand 6	D	461	463	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	528	first strand
Strand 2	D	643	649	parallel
Strand 3	D	635	640	anti-parallel
Strand 4	D	572	576	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	626	627	first strand
Strand 2	D	657	659	anti-parallel
Strand 3	D	673	674	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	743	747	first strand
Strand 2	D	772	777	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O7O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O7O