Analysis of interatomic Contacts of Structural Units in PDB entry:
5O81

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O81 entry

There are 6 chains in PDB entry 5O81 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	GLY 502
B	LYS 2	GLY 502
C	LYS 2	GLY 502
D	LYS 2	GLY 502
E	LYS 2	GLY 502
F	LYS 2	GLY 502

There are 97 helices in PDB entry 5O81. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	22	Right-handed 310
Helix 2	AA2	A	51	62	Right-handed alpha
Helix 3	AA3	A	71	77	Right-handed 310
Helix 4	AA4	A	78	83	Right-handed 310
Helix 5	AA5	A	106	117	Right-handed alpha
Helix 6	AA6	A	131	144	Right-handed alpha
Helix 7	AA7	A	148	157	Right-handed alpha
Helix 8	AA8	A	184	203	Right-handed alpha
Helix 9	AA9	A	222	233	Right-handed alpha
Helix 10	AB1	A	251	257	Right-handed alpha
Helix 11	AB2	A	257	281	Right-handed alpha
Helix 12	AB3	A	299	310	Right-handed alpha
Helix 13	AB4	A	324	340	Right-handed alpha
Helix 14	AB5	A	374	385	Right-handed alpha
Helix 15	AB6	A	418	421	Right-handed 310
Helix 16	AB7	B	18	22	Right-handed 310
Helix 17	AB8	B	51	62	Right-handed alpha
Helix 18	AB9	B	71	77	Right-handed 310
Helix 19	AC1	B	78	83	Right-handed 310
Helix 20	AC2	B	85	89	Right-handed 310
Helix 21	AC3	B	107	117	Right-handed alpha
Helix 22	AC4	B	131	144	Right-handed alpha
Helix 23	AC5	B	148	157	Right-handed alpha
Helix 24	AC6	B	184	203	Right-handed alpha
Helix 25	AC7	B	222	233	Right-handed alpha
Helix 26	AC8	B	234	236	Right-handed 310
Helix 27	AC9	B	251	257	Right-handed alpha
Helix 28	AD1	B	257	281	Right-handed alpha
Helix 29	AD2	B	299	310	Right-handed alpha
Helix 30	AD3	B	324	341	Right-handed alpha
Helix 31	AD4	B	374	385	Right-handed alpha
Helix 32	AD5	C	18	22	Right-handed 310
Helix 33	AD6	C	51	62	Right-handed alpha
Helix 34	AD7	C	71	77	Right-handed 310
Helix 35	AD8	C	78	83	Right-handed 310
Helix 36	AD9	C	85	89	Right-handed 310
Helix 37	AE1	C	107	117	Right-handed alpha
Helix 38	AE2	C	131	144	Right-handed alpha
Helix 39	AE3	C	148	157	Right-handed alpha
Helix 40	AE4	C	184	203	Right-handed alpha
Helix 41	AE5	C	222	233	Right-handed alpha
Helix 42	AE6	C	234	236	Right-handed 310
Helix 43	AE7	C	251	257	Right-handed alpha
Helix 44	AE8	C	258	281	Right-handed alpha
Helix 45	AE9	C	299	310	Right-handed alpha
Helix 46	AF1	C	324	341	Right-handed alpha
Helix 47	AF2	C	374	385	Right-handed alpha
Helix 48	AF3	D	18	22	Right-handed 310
Helix 49	AF4	D	51	62	Right-handed alpha
Helix 50	AF5	D	71	77	Right-handed 310
Helix 51	AF6	D	78	83	Right-handed 310
Helix 52	AF7	D	85	89	Right-handed 310
Helix 53	AF8	D	106	116	Right-handed alpha
Helix 54	AF9	D	131	144	Right-handed alpha
Helix 55	AG1	D	148	157	Right-handed alpha
Helix 56	AG2	D	184	203	Right-handed alpha
Helix 57	AG3	D	222	233	Right-handed alpha
Helix 58	AG4	D	234	236	Right-handed 310
Helix 59	AG5	D	251	257	Right-handed alpha
Helix 60	AG6	D	258	281	Right-handed alpha
Helix 61	AG7	D	299	310	Right-handed alpha
Helix 62	AG8	D	324	341	Right-handed alpha
Helix 63	AG9	D	374	385	Right-handed alpha
Helix 64	AH1	D	418	421	Right-handed 310
Helix 65	AH2	E	18	22	Right-handed 310
Helix 66	AH3	E	51	62	Right-handed alpha
Helix 67	AH4	E	71	77	Right-handed 310
Helix 68	AH5	E	78	83	Right-handed 310
Helix 69	AH6	E	85	89	Right-handed 310
Helix 70	AH7	E	106	117	Right-handed alpha
Helix 71	AH8	E	131	144	Right-handed alpha
Helix 72	AH9	E	148	157	Right-handed alpha
Helix 73	AI1	E	184	203	Right-handed alpha
Helix 74	AI2	E	222	233	Right-handed alpha
Helix 75	AI3	E	234	236	Right-handed 310
Helix 76	AI4	E	251	257	Right-handed alpha
Helix 77	AI5	E	257	281	Right-handed alpha
Helix 78	AI6	E	299	310	Right-handed alpha
Helix 79	AI7	E	324	340	Right-handed alpha
Helix 80	AI8	E	374	385	Right-handed alpha
Helix 81	AI9	F	18	22	Right-handed 310
Helix 82	AJ1	F	51	62	Right-handed alpha
Helix 83	AJ2	F	71	77	Right-handed 310
Helix 84	AJ3	F	78	83	Right-handed 310
Helix 85	AJ4	F	85	89	Right-handed 310
Helix 86	AJ5	F	106	117	Right-handed alpha
Helix 87	AJ6	F	131	144	Right-handed alpha
Helix 88	AJ7	F	148	157	Right-handed alpha
Helix 89	AJ8	F	184	203	Right-handed alpha
Helix 90	AJ9	F	222	233	Right-handed alpha
Helix 91	AK1	F	234	236	Right-handed 310
Helix 92	AK2	F	251	256	Right-handed alpha
Helix 93	AK3	F	258	281	Right-handed alpha
Helix 94	AK4	F	299	307	Right-handed alpha
Helix 95	AK5	F	324	341	Right-handed alpha
Helix 96	AK6	F	374	385	Right-handed alpha
Helix 97	AK7	F	418	421	Right-handed 310

There are 35 sheets in PDB entry 5O81. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	395	first strand
Strand 2	A	3	8	anti-parallel
Strand 3	A	436	442	parallel
Strand 4	A	486	491	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	16	first strand
Strand 2	A	388	390	anti-parallel
Strand 3	A	410	416	anti-parallel
Strand 4	A	423	429	anti-parallel
Strand 5	A	495	501	anti-parallel
Strand 6	A	450	456	anti-parallel
Strand 7	A	475	476	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	25	first strand
Strand 2	A	65	68	parallel
Strand 3	A	120	124	parallel
Strand 4	A	167	170	parallel
Strand 5	A	207	210	parallel
Strand 6	A	238	245	parallel
Strand 7	A	287	295	parallel
Strand 8	A	345	350	parallel
Strand 9	A	23	25	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	99	101	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	362	first strand
Strand 2	A	369	371	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	399	first strand
Strand 2	A	407	408	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	395	first strand
Strand 2	B	3	8	anti-parallel
Strand 3	B	436	442	parallel
Strand 4	B	486	491	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	16	first strand
Strand 2	B	388	390	anti-parallel
Strand 3	B	410	416	anti-parallel
Strand 4	B	423	429	anti-parallel
Strand 5	B	495	501	anti-parallel
Strand 6	B	450	456	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	25	first strand
Strand 2	B	65	68	parallel
Strand 3	B	120	124	parallel
Strand 4	B	167	170	parallel
Strand 5	B	207	210	parallel
Strand 6	B	238	245	parallel
Strand 7	B	287	295	parallel
Strand 8	B	345	351	parallel
Strand 9	B	23	25	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	99	101	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	361	first strand
Strand 2	B	370	371	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	399	first strand
Strand 2	B	407	408	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	7	first strand
Strand 2	C	393	395	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	16	first strand
Strand 2	C	388	390	anti-parallel
Strand 3	C	410	417	anti-parallel
Strand 4	C	422	429	anti-parallel
Strand 5	C	495	501	anti-parallel
Strand 6	C	450	456	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	25	first strand
Strand 2	C	65	68	parallel
Strand 3	C	120	124	parallel
Strand 4	C	167	169	parallel
Strand 5	C	207	210	parallel
Strand 6	C	238	245	parallel
Strand 7	C	287	295	parallel
Strand 8	C	345	351	parallel
Strand 9	C	23	25	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	99	101	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	361	first strand
Strand 2	C	370	371	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	399	first strand
Strand 2	C	407	408	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	436	438	first strand
Strand 2	C	489	491	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	395	first strand
Strand 2	D	3	8	anti-parallel
Strand 3	D	436	442	parallel
Strand 4	D	487	491	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	16	first strand
Strand 2	D	388	390	anti-parallel
Strand 3	D	410	417	anti-parallel
Strand 4	D	422	429	anti-parallel
Strand 5	D	495	500	anti-parallel
Strand 6	D	452	456	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	25	first strand
Strand 2	D	65	68	parallel
Strand 3	D	120	124	parallel
Strand 4	D	167	170	parallel
Strand 5	D	207	210	parallel
Strand 6	D	238	245	parallel
Strand 7	D	287	295	parallel
Strand 8	D	345	351	parallel
Strand 9	D	23	25	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	94	first strand
Strand 2	D	99	101	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	360	361	first strand
Strand 2	D	370	371	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	399	first strand
Strand 2	D	407	408	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	393	395	first strand
Strand 2	E	3	8	anti-parallel
Strand 3	E	436	442	parallel
Strand 4	E	486	491	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	16	first strand
Strand 2	E	388	390	anti-parallel
Strand 3	E	410	416	anti-parallel
Strand 4	E	423	429	anti-parallel
Strand 5	E	495	501	anti-parallel
Strand 6	E	450	456	anti-parallel
Strand 7	E	475	476	anti-parallel

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There are 9 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	25	first strand
Strand 2	E	65	68	parallel
Strand 3	E	120	124	parallel
Strand 4	E	167	170	parallel
Strand 5	E	207	210	parallel
Strand 6	E	238	245	parallel
Strand 7	E	287	295	parallel
Strand 8	E	345	351	parallel
Strand 9	E	23	25	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	94	first strand
Strand 2	E	99	101	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	360	362	first strand
Strand 2	E	369	371	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	393	395	first strand
Strand 2	F	3	9	anti-parallel
Strand 3	F	436	443	parallel
Strand 4	F	486	491	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	16	first strand
Strand 2	F	388	390	anti-parallel
Strand 3	F	410	416	anti-parallel
Strand 4	F	423	429	anti-parallel
Strand 5	F	495	501	anti-parallel
Strand 6	F	450	456	anti-parallel
Strand 7	F	475	476	anti-parallel

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There are 9 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	25	first strand
Strand 2	F	65	68	parallel
Strand 3	F	120	124	parallel
Strand 4	F	167	170	parallel
Strand 5	F	207	210	parallel
Strand 6	F	238	245	parallel
Strand 7	F	287	295	parallel
Strand 8	F	345	351	parallel
Strand 9	F	23	25	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	94	first strand
Strand 2	F	99	101	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	360	361	first strand
Strand 2	F	370	371	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O81

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O81