Analysis of interatomic Contacts of Structural Units in PDB entry:
5O85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O85 entry

There are 4 chains in PDB entry 5O85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8PRO 233
B
 LEU 328HIS 387
C
 ASP 6PRO 233
D
 PHE 326HIS 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5O85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 28Right-handed alpha
Helix 2
AA2
A
33 52Right-handed alpha
Helix 3
AA3
A
106 121Right-handed alpha
Helix 4
AA4
A
132 151Right-handed alpha
Helix 5
AA5
A
173 187Right-handed alpha
Helix 6
AA6
A
200 211Right-handed alpha
Helix 7
AA7
A
219 221Right-handed 310
Helix 8
AA8
A
222 231Right-handed alpha
Helix 9
AA9
B
368 378Right-handed alpha
Helix 10
AB1
B
382 387Right-handed alpha
Helix 11
AB2
C
18 28Right-handed alpha
Helix 12
AB3
C
33 52Right-handed alpha
Helix 13
AB4
C
102 122Right-handed alpha
Helix 14
AB5
C
132 151Right-handed alpha
Helix 15
AB6
C
173 187Right-handed alpha
Helix 16
AB7
C
200 211Right-handed alpha
Helix 17
AB8
C
219 221Right-handed 310
Helix 18
AB9
C
222 231Right-handed alpha
Helix 19
AC1
D
368 378Right-handed alpha
Helix 20
AC2
D
382 387Right-handed alpha
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There are 3 sheets in PDB entry 5O85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 71first strand
Strand 2
A
56 62anti-parallel
Strand 3
A
10 15parallel
Strand 4
A
160 165parallel
Strand 5
A
190 195parallel
Strand 6
A
214 216parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 71first strand
Strand 2
C
56 62anti-parallel
Strand 3
C
9 16parallel
Strand 4
C
158 165parallel
Strand 5
C
190 195parallel
Strand 6
C
214 216parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
332 333first strand
Strand 2
D
358 359anti-parallel
Strand 3
D
366 367anti-parallel
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