Analysis of interatomic Contacts of Structural Units in PDB entry:
5O8F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O8F entry

There are 4 chains in PDB entry 5O8F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 9	LEU 418
B	MET 9	LEU 418
C	MET 9	LEU 418
D	MET 9	VAL 255

There are 70 helices in PDB entry 5O8F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	21	Right-handed alpha
Helix 2	AA2	A	70	73	Right-handed 310
Helix 3	AA3	A	84	91	Right-handed 310
Helix 4	AA4	A	139	143	Right-handed 310
Helix 5	AA5	A	170	173	Right-handed 310
Helix 6	AA6	A	177	181	Right-handed 310
Helix 7	AA7	A	226	233	Right-handed alpha
Helix 8	AA8	A	233	245	Right-handed alpha
Helix 9	AA9	A	246	250	Right-handed 310
Helix 10	AB1	A	254	278	Right-handed alpha
Helix 11	AB2	A	287	314	Right-handed alpha
Helix 12	AB3	A	317	417	Right-handed alpha
Helix 13	AB4	B	10	21	Right-handed alpha
Helix 14	AB5	B	70	73	Right-handed 310
Helix 15	AB6	B	84	91	Right-handed 310
Helix 16	AB7	B	139	143	Right-handed 310
Helix 17	AB8	B	170	173	Right-handed 310
Helix 18	AB9	B	177	181	Right-handed 310
Helix 19	AC1	B	226	233	Right-handed alpha
Helix 20	AC2	B	233	245	Right-handed alpha
Helix 21	AC3	B	246	250	Right-handed 310
Helix 22	AC4	B	254	278	Right-handed alpha
Helix 23	AC5	B	287	314	Right-handed alpha
Helix 24	AC6	B	317	417	Right-handed alpha
Helix 25	AC7	C	10	21	Right-handed alpha
Helix 26	AC8	C	70	73	Right-handed 310
Helix 27	AC9	C	84	91	Right-handed 310
Helix 28	AD1	C	139	143	Right-handed 310
Helix 29	AD2	C	170	173	Right-handed 310
Helix 30	AD3	C	177	181	Right-handed 310
Helix 31	AD4	C	226	233	Right-handed alpha
Helix 32	AD5	C	233	245	Right-handed alpha
Helix 33	AD6	C	246	250	Right-handed 310
Helix 34	AD7	C	254	278	Right-handed alpha
Helix 35	AD8	C	287	314	Right-handed alpha
Helix 36	AD9	C	317	417	Right-handed alpha
Helix 37	AE1	D	10	21	Right-handed alpha
Helix 38	AE2	D	70	73	Right-handed 310
Helix 39	AE3	D	84	91	Right-handed 310
Helix 40	AE4	D	139	143	Right-handed 310
Helix 41	AE5	D	170	173	Right-handed 310
Helix 42	AE6	D	177	181	Right-handed 310
Helix 43	AE7	D	226	233	Right-handed alpha
Helix 44	AE8	D	233	245	Right-handed alpha
Helix 45	AE9	D	246	250	Right-handed 310
Helix 46	AF1	D	254	278	Right-handed alpha
Helix 47	AF2	D	287	314	Right-handed alpha
Helix 48	AF3	D	317	417	Right-handed alpha
Helix 49	AF4	E	10	21	Right-handed alpha
Helix 50	AF5	E	70	73	Right-handed 310
Helix 51	AF6	E	84	91	Right-handed 310
Helix 52	AF7	E	139	143	Right-handed 310
Helix 53	AF8	E	170	173	Right-handed 310
Helix 54	AF9	E	177	181	Right-handed 310
Helix 55	AG1	E	226	233	Right-handed alpha
Helix 56	AG2	E	233	245	Right-handed alpha
Helix 57	AG3	E	246	250	Right-handed 310
Helix 58	AG4	E	254	278	Right-handed alpha
Helix 59	AG5	E	287	314	Right-handed alpha
Helix 60	AG6	E	317	417	Right-handed alpha
Helix 61	AG7	K	87	91	Right-handed 310
Helix 62	AG8	K	108	110	Right-handed 310
Helix 63	AG9	L	87	91	Right-handed 310
Helix 64	AH1	L	108	110	Right-handed 310
Helix 65	AH2	M	87	91	Right-handed 310
Helix 66	AH3	M	108	110	Right-handed 310
Helix 67	AH4	N	87	91	Right-handed 310
Helix 68	AH5	N	108	110	Right-handed 310
Helix 69	AH6	O	87	91	Right-handed 310
Helix 70	AH7	O	108	110	Right-handed 310

There are 35 sheets in PDB entry 5O8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	A	123	135	anti-parallel
Strand 4	A	56	68	anti-parallel
Strand 5	A	36	51	anti-parallel
Strand 6	A	164	168	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	106	first strand
Strand 2	A	123	135	anti-parallel
Strand 3	A	56	68	anti-parallel
Strand 4	A	36	51	anti-parallel
Strand 5	A	175	176	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	147	156	anti-parallel
Strand 3	A	203	216	anti-parallel
Strand 4	A	186	188	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	147	156	anti-parallel
Strand 3	A	203	216	anti-parallel
Strand 4	A	192	200	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	114	118	anti-parallel
Strand 3	B	123	135	anti-parallel
Strand 4	B	56	68	anti-parallel
Strand 5	B	36	51	anti-parallel
Strand 6	B	164	168	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	123	135	anti-parallel
Strand 3	B	56	68	anti-parallel
Strand 4	B	36	51	anti-parallel
Strand 5	B	175	176	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	203	216	anti-parallel
Strand 4	B	186	188	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	203	216	anti-parallel
Strand 4	B	192	200	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	83	first strand
Strand 2	C	114	118	anti-parallel
Strand 3	C	123	135	anti-parallel
Strand 4	C	56	68	anti-parallel
Strand 5	C	36	51	anti-parallel
Strand 6	C	164	168	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	106	first strand
Strand 2	C	123	135	anti-parallel
Strand 3	C	56	68	anti-parallel
Strand 4	C	36	51	anti-parallel
Strand 5	C	175	176	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	C	147	156	anti-parallel
Strand 3	C	203	216	anti-parallel
Strand 4	C	186	188	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	C	147	156	anti-parallel
Strand 3	C	203	216	anti-parallel
Strand 4	C	192	200	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	83	first strand
Strand 2	D	114	118	anti-parallel
Strand 3	D	123	135	anti-parallel
Strand 4	D	56	68	anti-parallel
Strand 5	D	36	51	anti-parallel
Strand 6	D	164	168	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	106	first strand
Strand 2	D	123	135	anti-parallel
Strand 3	D	56	68	anti-parallel
Strand 4	D	36	51	anti-parallel
Strand 5	D	175	176	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	D	147	156	anti-parallel
Strand 3	D	203	216	anti-parallel
Strand 4	D	186	188	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	D	147	156	anti-parallel
Strand 3	D	203	216	anti-parallel
Strand 4	D	192	200	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	83	first strand
Strand 2	E	114	118	anti-parallel
Strand 3	E	123	135	anti-parallel
Strand 4	E	56	68	anti-parallel
Strand 5	E	36	51	anti-parallel
Strand 6	E	164	168	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	106	first strand
Strand 2	E	123	135	anti-parallel
Strand 3	E	56	68	anti-parallel
Strand 4	E	36	51	anti-parallel
Strand 5	E	175	176	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	147	156	anti-parallel
Strand 3	E	203	216	anti-parallel
Strand 4	E	186	188	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	147	156	anti-parallel
Strand 3	E	203	216	anti-parallel
Strand 4	E	192	200	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	2	7	first strand
Strand 2	K	18	26	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	13	first strand
Strand 2	K	119	124	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	33	39	anti-parallel
Strand 5	K	46	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	13	first strand
Strand 2	K	119	124	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	112	115	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	2	7	first strand
Strand 2	L	18	26	anti-parallel
Strand 3	L	78	83	anti-parallel
Strand 4	L	68	73	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	119	124	parallel
Strand 3	L	92	99	anti-parallel
Strand 4	L	33	39	anti-parallel
Strand 5	L	46	51	anti-parallel
Strand 6	L	58	60	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	119	124	parallel
Strand 3	L	92	99	anti-parallel
Strand 4	L	112	115	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	2	7	first strand
Strand 2	M	18	26	anti-parallel
Strand 3	M	78	83	anti-parallel
Strand 4	M	68	73	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	13	first strand
Strand 2	M	119	124	parallel
Strand 3	M	92	99	anti-parallel
Strand 4	M	33	39	anti-parallel
Strand 5	M	46	51	anti-parallel
Strand 6	M	58	60	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	13	first strand
Strand 2	M	119	124	parallel
Strand 3	M	92	99	anti-parallel
Strand 4	M	112	115	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	2	7	first strand
Strand 2	N	18	26	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	13	first strand
Strand 2	N	119	124	parallel
Strand 3	N	92	99	anti-parallel
Strand 4	N	33	39	anti-parallel
Strand 5	N	46	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	13	first strand
Strand 2	N	119	124	parallel
Strand 3	N	92	99	anti-parallel
Strand 4	N	112	115	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	2	7	first strand
Strand 2	O	18	26	anti-parallel
Strand 3	O	78	83	anti-parallel
Strand 4	O	68	73	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	11	13	first strand
Strand 2	O	119	124	parallel
Strand 3	O	92	99	anti-parallel
Strand 4	O	33	39	anti-parallel
Strand 5	O	46	51	anti-parallel
Strand 6	O	58	60	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	11	13	first strand
Strand 2	O	119	124	parallel
Strand 3	O	92	99	anti-parallel
Strand 4	O	112	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O8F

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O8F