Analysis of interatomic Contacts of Structural Units in PDB entry:
5O8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O8H entry

There are 4 chains in PDB entry 5O8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1THR 346
B
MET 1THR 346
C
MET 1THR 346
D
MET 1PRO 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 5O8H. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
38 46Right-handed alpha
Helix 2
AA2
A
95 100Right-handed alpha
Helix 3
AA3
A
101 106Right-handed 310
Helix 4
AA4
A
133 135Right-handed 310
Helix 5
AA5
A
144 149Right-handed alpha
Helix 6
AA6
A
150 153Right-handed 310
Helix 7
AA7
A
155 164Right-handed alpha
Helix 8
AA8
A
165 169Right-handed 310
Helix 9
AA9
A
181 195Right-handed alpha
Helix 10
AB1
A
205 215Right-handed alpha
Helix 11
AB2
A
226 235Right-handed alpha
Helix 12
AB3
A
249 259Right-handed alpha
Helix 13
AB4
A
297 310Right-handed alpha
Helix 14
AB5
A
324 335Right-handed alpha
Helix 15
AB6
B
38 46Right-handed alpha
Helix 16
AB7
B
95 100Right-handed alpha
Helix 17
AB8
B
101 106Right-handed 310
Helix 18
AB9
B
133 135Right-handed 310
Helix 19
AC1
B
144 149Right-handed alpha
Helix 20
AC2
B
150 153Right-handed 310
Helix 21
AC3
B
155 164Right-handed alpha
Helix 22
AC4
B
165 169Right-handed 310
Helix 23
AC5
B
181 195Right-handed alpha
Helix 24
AC6
B
205 215Right-handed alpha
Helix 25
AC7
B
226 235Right-handed alpha
Helix 26
AC8
B
249 259Right-handed alpha
Helix 27
AC9
B
297 310Right-handed alpha
Helix 28
AD1
B
324 335Right-handed alpha
Helix 29
AD2
C
38 46Right-handed alpha
Helix 30
AD3
C
95 100Right-handed alpha
Helix 31
AD4
C
101 106Right-handed 310
Helix 32
AD5
C
133 135Right-handed 310
Helix 33
AD6
C
144 149Right-handed alpha
Helix 34
AD7
C
150 153Right-handed 310
Helix 35
AD8
C
155 164Right-handed alpha
Helix 36
AD9
C
165 169Right-handed 310
Helix 37
AE1
C
181 195Right-handed alpha
Helix 38
AE2
C
205 215Right-handed alpha
Helix 39
AE3
C
226 235Right-handed alpha
Helix 40
AE4
C
249 259Right-handed alpha
Helix 41
AE5
C
297 310Right-handed alpha
Helix 42
AE6
C
324 335Right-handed alpha
Helix 43
AE7
D
38 46Right-handed alpha
Helix 44
AE8
D
95 100Right-handed alpha
Helix 45
AE9
D
101 106Right-handed 310
Helix 46
AF1
D
133 135Right-handed 310
Helix 47
AF2
D
144 149Right-handed alpha
Helix 48
AF3
D
150 153Right-handed 310
Helix 49
AF4
D
155 164Right-handed alpha
Helix 50
AF5
D
165 169Right-handed 310
Helix 51
AF6
D
181 195Right-handed alpha
Helix 52
AF7
D
205 215Right-handed alpha
Helix 53
AF8
D
226 235Right-handed alpha
Helix 54
AF9
D
249 259Right-handed alpha
Helix 55
AG1
D
297 310Right-handed alpha
Helix 56
AG2
D
324 335Right-handed alpha
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There are 18 sheets in PDB entry 5O8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
14 17first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
58 59anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
128 131first strand
Strand 2
A
28 36anti-parallel
Strand 3
A
63 71anti-parallel
Strand 4
A
83 86anti-parallel
Strand 5
A
137 139anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
128 131first strand
Strand 2
A
28 36anti-parallel
Strand 3
A
340 343anti-parallel
Strand 4
A
317 320parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
219 222first strand
Strand 2
A
198 203parallel
Strand 3
A
174 178parallel
Strand 4
A
240 245parallel
Strand 5
A
260 268parallel
Strand 6
A
289 291parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
277 279first strand
Strand 2
C
277 279anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
14 17first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
58 59anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
128 131first strand
Strand 2
B
28 36anti-parallel
Strand 3
B
63 71anti-parallel
Strand 4
B
83 86anti-parallel
Strand 5
B
137 139anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
128 131first strand
Strand 2
B
28 36anti-parallel
Strand 3
B
340 343anti-parallel
Strand 4
B
317 320parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
219 222first strand
Strand 2
B
198 203parallel
Strand 3
B
174 178parallel
Strand 4
B
240 245parallel
Strand 5
B
260 268parallel
Strand 6
B
289 291parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
277 279first strand
Strand 2
D
277 279anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
14 17first strand
Strand 2
C
2 6anti-parallel
Strand 3
C
58 59anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
128 131first strand
Strand 2
C
28 36anti-parallel
Strand 3
C
63 71anti-parallel
Strand 4
C
83 86anti-parallel
Strand 5
C
137 139anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
128 131first strand
Strand 2
C
28 36anti-parallel
Strand 3
C
340 343anti-parallel
Strand 4
C
317 320parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
219 222first strand
Strand 2
C
198 203parallel
Strand 3
C
174 178parallel
Strand 4
C
240 245parallel
Strand 5
C
260 268parallel
Strand 6
C
289 291parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
14 17first strand
Strand 2
D
2 6anti-parallel
Strand 3
D
58 59anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
128 131first strand
Strand 2
D
28 36anti-parallel
Strand 3
D
63 71anti-parallel
Strand 4
D
83 86anti-parallel
Strand 5
D
137 139anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
128 131first strand
Strand 2
D
28 36anti-parallel
Strand 3
D
340 343anti-parallel
Strand 4
D
317 320parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
219 222first strand
Strand 2
D
198 203parallel
Strand 3
D
174 178parallel
Strand 4
D
240 245parallel
Strand 5
D
260 268parallel
Strand 6
D
289 291parallel
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