Analysis of interatomic Contacts of Structural Units in PDB entry:
5O8L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O8L entry

There is 1 chain in PDB entry 5O8L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 334	LYS 1433

There are 42 helices in PDB entry 5O8L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	425	430	Right-handed alpha
Helix 2	AA2	A	435	439	Right-handed 310
Helix 3	AA3	A	460	462	Right-handed 310
Helix 4	AA4	A	476	478	Right-handed 310
Helix 5	AA5	A	482	495	Right-handed alpha
Helix 6	AA6	A	509	532	Right-handed alpha
Helix 7	AA7	A	534	546	Right-handed alpha
Helix 8	AA8	A	560	568	Right-handed 310
Helix 9	AA9	A	588	592	Right-handed 310
Helix 10	AB1	A	638	654	Right-handed alpha
Helix 11	AB2	A	654	660	Right-handed alpha
Helix 12	AB3	A	665	669	Right-handed 310
Helix 13	AB4	A	678	683	Right-handed 310
Helix 14	AB5	A	684	699	Right-handed alpha
Helix 15	AB6	A	703	708	Right-handed alpha
Helix 16	AB7	A	720	729	Right-handed alpha
Helix 17	AB8	A	737	748	Right-handed alpha
Helix 18	AB9	A	751	755	Right-handed 310
Helix 19	AC1	A	757	763	Right-handed 310
Helix 20	AC2	A	793	805	Right-handed alpha
Helix 21	AC3	A	811	816	Right-handed alpha
Helix 22	AC4	A	820	836	Right-handed alpha
Helix 23	AC5	A	838	842	Right-handed 310
Helix 24	AC6	A	848	859	Right-handed alpha
Helix 25	AC7	A	868	872	Right-handed alpha
Helix 26	AC8	A	885	900	Right-handed alpha
Helix 27	AC9	A	961	965	Right-handed 310
Helix 28	AD1	A	985	989	Right-handed 310
Helix 29	AD2	A	990	994	Right-handed 310
Helix 30	AD3	A	1054	1059	Right-handed alpha
Helix 31	AD4	A	1078	1081	Right-handed 310
Helix 32	AD5	A	1082	1090	Right-handed alpha
Helix 33	AD6	A	1090	1097	Right-handed alpha
Helix 34	AD7	A	1116	1120	Right-handed 310
Helix 35	AD8	A	1151	1165	Right-handed alpha
Helix 36	AD9	A	1207	1209	Right-handed 310
Helix 37	AE1	A	1225	1231	Right-handed alpha
Helix 38	AE2	A	1234	1241	Right-handed alpha
Helix 39	AE3	A	1244	1250	Right-handed alpha
Helix 40	AE4	A	1269	1271	Right-handed 310
Helix 41	AE5	A	1282	1286	Right-handed 310
Helix 42	AE6	A	1309	1314	Right-handed 310

There are 17 sheets in PDB entry 5O8L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	350	first strand
Strand 2	A	356	357	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	372	first strand
Strand 2	A	375	379	anti-parallel
Strand 3	A	385	386	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	392	first strand
Strand 2	A	397	400	anti-parallel
Strand 3	A	406	408	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	420	first strand
Strand 2	A	1318	1323	anti-parallel
Strand 3	A	1328	1331	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	452	first strand
Strand 2	A	473	474	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	459	first strand
Strand 2	A	463	466	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	548	549	first strand
Strand 2	A	557	558	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1183	1184	first strand
Strand 2	A	632	634	anti-parallel
Strand 3	A	1273	1277	anti-parallel
Strand 4	A	579	583	anti-parallel
Strand 5	A	1189	1198	anti-parallel
Strand 6	A	1211	1220	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	713	714	first strand
Strand 2	A	673	676	parallel
Strand 3	A	1174	1179	parallel
Strand 4	A	1101	1103	parallel
Strand 5	A	1062	1064	parallel
Strand 6	A	863	867	parallel
Strand 7	A	782	785	parallel
Strand 8	A	735	736	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	904	908	first strand
Strand 2	A	914	918	anti-parallel
Strand 3	A	940	944	anti-parallel
Strand 4	A	1021	1027	anti-parallel
Strand 5	A	968	976	anti-parallel
Strand 6	A	979	982	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	904	908	first strand
Strand 2	A	914	918	anti-parallel
Strand 3	A	940	944	anti-parallel
Strand 4	A	1021	1027	anti-parallel
Strand 5	A	968	976	anti-parallel
Strand 6	A	995	996	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	956	959	first strand
Strand 2	A	1002	1005	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1288	1289	first strand
Strand 2	A	1294	1295	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1341	1344	first strand
Strand 2	A	1350	1353	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1369	1371	first strand
Strand 2	A	1378	1380	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1391	1393	first strand
Strand 2	A	1401	1403	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1413	1416	first strand
Strand 2	A	1422	1425	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O8L

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O8L