Analysis of interatomic Contacts of Structural Units in PDB entry:
5O8O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O8O entry

There is 1 chain in PDB entry 5O8O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 18PHE 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 5O8O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 37Right-handed alpha
Helix 2
AA2
A
43 61Right-handed alpha
Helix 3
AA3
A
332 342Right-handed alpha
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There are 2 sheets in PDB entry 5O8O. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 20 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 76first strand
Strand 2
A
79 85anti-parallel
Strand 3
A
95 102anti-parallel
Strand 4
A
105 113anti-parallel
Strand 5
A
117 124anti-parallel
Strand 6
A
131 137anti-parallel
Strand 7
A
143 151anti-parallel
Strand 8
A
155 162anti-parallel
Strand 9
A
173 182anti-parallel
Strand 10
A
187 197anti-parallel
Strand 11
A
204 215anti-parallel
Strand 12
A
220 225anti-parallel
Strand 13
A
231 238anti-parallel
Strand 14
A
243 252anti-parallel
Strand 15
A
266 275anti-parallel
Strand 16
A
280 288anti-parallel
Strand 17
A
291 299anti-parallel
Strand 18
A
305 314anti-parallel
Strand 19
A
319 329anti-parallel
Strand 20
A
67 76parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
170 171anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il