Analysis of interatomic Contacts of Structural Units in PDB entry:
5O8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O8R entry

There are 2 chains in PDB entry 5O8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3GLU 429
B
 THR 4MET 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5O8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 25Right-handed alpha
Helix 2
AA2
A
73 81Right-handed alpha
Helix 3
AA3
A
83 91Right-handed alpha
Helix 4
AA4
A
96 111Right-handed alpha
Helix 5
AA5
A
163 170Right-handed 310
Helix 6
AA6
A
178 188Right-handed alpha
Helix 7
AA7
A
198 210Right-handed alpha
Helix 8
AA8
A
234 239Right-handed alpha
Helix 9
AA9
A
242 250Right-handed alpha
Helix 10
AB1
A
258 264Right-handed alpha
Helix 11
AB2
A
265 268Right-handed 310
Helix 12
AB3
A
272 288Right-handed alpha
Helix 13
AB4
A
344 354Right-handed 310
Helix 14
AB5
A
386 390Right-handed 310
Helix 15
AB6
A
392 394Right-handed 310
Helix 16
AB7
A
395 409Right-handed alpha
Helix 17
AB8
B
14 25Right-handed alpha
Helix 18
AB9
B
44 48Right-handed 310
Helix 19
AC1
B
73 81Right-handed alpha
Helix 20
AC2
B
83 91Right-handed alpha
Helix 21
AC3
B
96 111Right-handed alpha
Helix 22
AC4
B
163 167Right-handed 310
Helix 23
AC5
B
177 179Right-handed 310
Helix 24
AC6
B
180 181Right-handed 310
Helix 25
AC7
B
182 188Right-handed alpha
Helix 26
AC8
B
198 211Right-handed alpha
Helix 27
AC9
B
234 239Right-handed alpha
Helix 28
AD1
B
242 252Right-handed alpha
Helix 29
AD2
B
253 264Right-handed alpha
Helix 30
AD3
B
264 269Right-handed alpha
Helix 31
AD4
B
272 288Right-handed alpha
Helix 32
AD5
B
344 346Right-handed 310
Helix 33
AD6
B
347 352Right-handed alpha
Helix 34
AD7
B
382 387Right-handed alpha
Helix 35
AD8
B
395 408Right-handed alpha
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There are 11 sheets in PDB entry 5O8R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
144 149parallel
Strand 3
A
132 138anti-parallel
Strand 4
A
118 125anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
32 35parallel
Strand 3
A
8 11parallel
Strand 4
A
152 154parallel
Strand 5
A
376 378parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
339 340anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
332 335parallel
Strand 3
A
191 195parallel
Strand 4
A
218 222parallel
Strand 5
A
294 297parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 308first strand
Strand 2
A
312 319anti-parallel
Strand 3
A
324 330anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
361 362anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 115first strand
Strand 2
B
32 35parallel
Strand 3
B
5 10parallel
Strand 4
B
144 154parallel
Strand 5
B
131 138anti-parallel
Strand 6
B
118 126anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 115first strand
Strand 2
B
32 35parallel
Strand 3
B
5 10parallel
Strand 4
B
144 154parallel
Strand 5
B
376 378parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 160first strand
Strand 2
B
339 340anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
332 335parallel
Strand 3
B
191 195parallel
Strand 4
B
218 222parallel
Strand 5
B
294 297parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 307first strand
Strand 2
B
313 319anti-parallel
Strand 3
B
324 329anti-parallel
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