Analysis of interatomic Contacts of Structural Units in PDB entry:
5O8X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O8X entry

There are 2 chains in PDB entry 5O8X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 6GLY 309
B
 ASP 6GLY 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5O8X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 24Right-handed alpha
Helix 2
AA2
A
27 36Right-handed alpha
Helix 3
AA3
A
41 50Right-handed alpha
Helix 4
AA4
A
57 66Right-handed alpha
Helix 5
AA5
A
67 81Right-handed alpha
Helix 6
AA6
A
81 93Right-handed alpha
Helix 7
AA7
A
95 107Right-handed alpha
Helix 8
AA8
A
118 129Right-handed alpha
Helix 9
AA9
A
132 150Right-handed alpha
Helix 10
AB1
A
153 156Right-handed 310
Helix 11
AB2
A
171 179Right-handed alpha
Helix 12
AB3
A
193 208Right-handed alpha
Helix 13
AB4
A
224 231Right-handed 310
Helix 14
AB5
A
241 246Right-handed alpha
Helix 15
AB6
A
278 286Right-handed alpha
Helix 16
AB7
A
290 309Right-handed alpha
Helix 17
AB8
B
10 24Right-handed alpha
Helix 18
AB9
B
27 37Right-handed alpha
Helix 19
AC1
B
41 49Right-handed alpha
Helix 20
AC2
B
57 62Right-handed alpha
Helix 21
AC3
B
63 65Right-handed 310
Helix 22
AC4
B
67 81Right-handed alpha
Helix 23
AC5
B
81 93Right-handed alpha
Helix 24
AC6
B
95 108Right-handed alpha
Helix 25
AC7
B
118 129Right-handed alpha
Helix 26
AC8
B
132 150Right-handed alpha
Helix 27
AC9
B
153 156Right-handed 310
Helix 28
AD1
B
171 179Right-handed alpha
Helix 29
AD2
B
193 208Right-handed alpha
Helix 30
AD3
B
224 231Right-handed 310
Helix 31
AD4
B
241 247Right-handed alpha
Helix 32
AD5
B
278 286Right-handed alpha
Helix 33
AD6
B
290 308Right-handed alpha
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There are 4 sheets in PDB entry 5O8X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
158 159anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
260 268anti-parallel
Strand 3
A
271 277anti-parallel
Strand 4
A
217 222anti-parallel
Strand 5
A
249 251anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
158 159anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 240first strand
Strand 2
B
260 267anti-parallel
Strand 3
B
272 277anti-parallel
Strand 4
B
217 222anti-parallel
Strand 5
B
249 251anti-parallel
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