Analysis of interatomic Contacts of Structural Units in PDB entry:
5O96

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O96 entry

There are 6 chains in PDB entry 5O96 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 3	LEU 244
B	VAL 3	LEU 244
C	VAL 3	LEU 244
D	ALA 2	LEU 244
E	VAL 3	LEU 244
F	VAL 3	SER 55

There are 57 helices in PDB entry 5O96. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	31	Right-handed alpha
Helix 2	AA2	A	91	104	Right-handed alpha
Helix 3	AA3	A	122	145	Right-handed alpha
Helix 4	AA4	A	158	165	Right-handed alpha
Helix 5	AA5	A	180	184	Right-handed 310
Helix 6	AA6	A	202	212	Right-handed alpha
Helix 7	AA7	A	225	242	Right-handed alpha
Helix 8	AA8	B	23	32	Right-handed alpha
Helix 9	AA9	B	91	104	Right-handed alpha
Helix 10	AB1	B	122	145	Right-handed alpha
Helix 11	AB2	B	158	165	Right-handed alpha
Helix 12	AB3	B	180	184	Right-handed 310
Helix 13	AB4	B	202	212	Right-handed alpha
Helix 14	AB5	B	225	242	Right-handed alpha
Helix 15	AB6	C	23	32	Right-handed alpha
Helix 16	AB7	C	91	104	Right-handed alpha
Helix 17	AB8	C	122	145	Right-handed alpha
Helix 18	AB9	C	158	165	Right-handed alpha
Helix 19	AC1	C	180	184	Right-handed 310
Helix 20	AC2	C	202	212	Right-handed alpha
Helix 21	AC3	C	225	242	Right-handed alpha
Helix 22	AC4	D	23	32	Right-handed alpha
Helix 23	AC5	D	91	104	Right-handed alpha
Helix 24	AC6	D	122	145	Right-handed alpha
Helix 25	AC7	D	158	165	Right-handed alpha
Helix 26	AC8	D	180	184	Right-handed 310
Helix 27	AC9	D	202	212	Right-handed alpha
Helix 28	AD1	D	225	242	Right-handed alpha
Helix 29	AD2	E	23	32	Right-handed alpha
Helix 30	AD3	E	92	104	Right-handed alpha
Helix 31	AD4	E	122	145	Right-handed alpha
Helix 32	AD5	E	158	165	Right-handed alpha
Helix 33	AD6	E	180	184	Right-handed 310
Helix 34	AD7	E	202	212	Right-handed alpha
Helix 35	AD8	E	225	242	Right-handed alpha
Helix 36	AD9	F	23	32	Right-handed alpha
Helix 37	AE1	F	91	104	Right-handed alpha
Helix 38	AE2	F	122	145	Right-handed alpha
Helix 39	AE3	F	158	165	Right-handed alpha
Helix 40	AE4	F	180	184	Right-handed 310
Helix 41	AE5	F	202	212	Right-handed alpha
Helix 42	AE6	F	225	242	Right-handed alpha
Helix 43	AE7	G	23	32	Right-handed alpha
Helix 44	AE8	G	91	104	Right-handed alpha
Helix 45	AE9	G	122	145	Right-handed alpha
Helix 46	AF1	G	158	165	Right-handed alpha
Helix 47	AF2	G	175	179	Right-handed 310
Helix 48	AF3	G	180	184	Right-handed 310
Helix 49	AF4	G	202	211	Right-handed alpha
Helix 50	AF5	G	225	242	Right-handed alpha
Helix 51	AF6	H	23	32	Right-handed alpha
Helix 52	AF7	H	91	104	Right-handed alpha
Helix 53	AF8	H	122	145	Right-handed alpha
Helix 54	AF9	H	158	165	Right-handed alpha
Helix 55	AG1	H	180	184	Right-handed 310
Helix 56	AG2	H	202	212	Right-handed alpha
Helix 57	AG3	H	225	242	Right-handed alpha

There are 25 sheets in PDB entry 5O96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	9	first strand
Strand 2	A	41	45	parallel
Strand 3	A	50	60	anti-parallel
Strand 4	A	63	73	anti-parallel
Strand 5	A	19	21	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	108	113	parallel
Strand 3	A	156	157	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	108	113	parallel
Strand 3	A	81	87	parallel
Strand 4	A	190	195	parallel
Strand 5	A	169	173	parallel
Strand 6	A	215	217	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	9	first strand
Strand 2	B	41	45	parallel
Strand 3	B	50	60	anti-parallel
Strand 4	B	63	73	anti-parallel
Strand 5	B	19	21	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	152	first strand
Strand 2	B	108	113	parallel
Strand 3	B	156	157	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	152	first strand
Strand 2	B	108	113	parallel
Strand 3	B	81	87	parallel
Strand 4	B	190	195	parallel
Strand 5	B	170	173	parallel
Strand 6	B	215	217	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	9	first strand
Strand 2	C	41	45	parallel
Strand 3	C	50	60	anti-parallel
Strand 4	C	63	73	anti-parallel
Strand 5	C	19	21	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	152	first strand
Strand 2	C	108	109	parallel
Strand 3	C	81	86	parallel
Strand 4	C	190	195	parallel
Strand 5	C	169	173	parallel
Strand 6	C	215	217	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	113	first strand
Strand 2	C	156	157	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	9	first strand
Strand 2	D	41	45	parallel
Strand 3	D	50	60	anti-parallel
Strand 4	D	63	68	anti-parallel
Strand 5	D	19	21	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	9	first strand
Strand 2	D	41	45	parallel
Strand 3	D	50	60	anti-parallel
Strand 4	D	72	73	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	152	first strand
Strand 2	D	108	113	parallel
Strand 3	D	156	157	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	152	first strand
Strand 2	D	108	113	parallel
Strand 3	D	81	87	parallel
Strand 4	D	190	195	parallel
Strand 5	D	169	173	parallel
Strand 6	D	215	217	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	9	first strand
Strand 2	E	41	45	parallel
Strand 3	E	50	60	anti-parallel
Strand 4	E	63	73	anti-parallel
Strand 5	E	19	21	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	152	first strand
Strand 2	E	108	113	parallel
Strand 3	E	156	157	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	152	first strand
Strand 2	E	108	113	parallel
Strand 3	E	81	87	parallel
Strand 4	E	190	195	parallel
Strand 5	E	170	173	parallel
Strand 6	E	215	217	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	9	first strand
Strand 2	F	41	45	parallel
Strand 3	F	50	60	anti-parallel
Strand 4	F	63	73	anti-parallel
Strand 5	F	19	21	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	152	first strand
Strand 2	F	108	113	parallel
Strand 3	F	156	157	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	152	first strand
Strand 2	F	108	113	parallel
Strand 3	F	81	87	parallel
Strand 4	F	190	195	parallel
Strand 5	F	169	173	parallel
Strand 6	F	215	217	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	7	9	first strand
Strand 2	G	41	45	parallel
Strand 3	G	50	59	anti-parallel
Strand 4	G	64	73	anti-parallel
Strand 5	G	19	21	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	152	first strand
Strand 2	G	108	113	parallel
Strand 3	G	156	157	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	152	first strand
Strand 2	G	108	113	parallel
Strand 3	G	81	87	parallel
Strand 4	G	190	195	parallel
Strand 5	G	169	173	parallel
Strand 6	G	215	217	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	9	first strand
Strand 2	H	41	45	parallel
Strand 3	H	50	60	anti-parallel
Strand 4	H	63	73	anti-parallel
Strand 5	H	19	21	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	152	first strand
Strand 2	H	108	113	parallel
Strand 3	H	156	157	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	152	first strand
Strand 2	H	108	113	parallel
Strand 3	H	81	87	parallel
Strand 4	H	190	195	parallel
Strand 5	H	169	173	parallel
Strand 6	H	215	217	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O96

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O96