Analysis of interatomic Contacts of Structural Units in PDB entry:
5O98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O98 entry

There are 2 chains in PDB entry 5O98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7GLU 299
B
 SER 7GLU 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5O98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 31Right-handed alpha
Helix 2
AA2
A
41 54Right-handed alpha
Helix 3
AA3
A
70 86Right-handed alpha
Helix 4
AA4
A
128 140Right-handed alpha
Helix 5
AA5
A
140 155Right-handed alpha
Helix 6
AA6
A
167 175Right-handed 310
Helix 7
AA7
A
177 185Right-handed alpha
Helix 8
AA8
A
186 190Right-handed 310
Helix 9
AA9
A
191 209Right-handed alpha
Helix 10
AB1
A
220 241Right-handed alpha
Helix 11
AB2
A
256 260Right-handed 310
Helix 12
AB3
A
266 279Right-handed alpha
Helix 13
AB4
B
18 31Right-handed alpha
Helix 14
AB5
B
41 55Right-handed alpha
Helix 15
AB6
B
70 85Right-handed alpha
Helix 16
AB7
B
128 140Right-handed alpha
Helix 17
AB8
B
140 155Right-handed alpha
Helix 18
AB9
B
167 175Right-handed 310
Helix 19
AC1
B
177 185Right-handed alpha
Helix 20
AC2
B
186 190Right-handed 310
Helix 21
AC3
B
191 209Right-handed alpha
Helix 22
AC4
B
220 241Right-handed alpha
Helix 23
AC5
B
256 260Right-handed 310
Helix 24
AC6
B
266 279Right-handed alpha
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There are 4 sheets in PDB entry 5O98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
34 39parallel
Strand 3
A
10 13parallel
Strand 4
A
90 93parallel
Strand 5
A
161 165parallel
Strand 6
A
245 250parallel
Strand 7
A
289 291parallel
Strand 8
A
294 296anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
125 126anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
34 39parallel
Strand 3
B
10 13parallel
Strand 4
B
90 93parallel
Strand 5
B
161 165parallel
Strand 6
B
245 250parallel
Strand 7
B
289 291parallel
Strand 8
B
294 296anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
125 126anti-parallel
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