Analysis of interatomic Contacts of Structural Units in PDB entry:
5O9A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O9A entry

There are 4 chains in PDB entry 5O9A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	SER 263
B	GLY 1	GLY 264
C	GLY 1	SER 263
D	ALA 2	CYS 261

There are 48 helices in PDB entry 5O9A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	26	Right-handed 310
Helix 2	AA2	A	27	30	Right-handed 310
Helix 3	AA3	A	34	48	Right-handed alpha
Helix 4	AA4	A	72	80	Right-handed alpha
Helix 5	AA5	A	93	98	Right-handed alpha
Helix 6	AA6	A	123	129	Right-handed alpha
Helix 7	AA7	A	141	150	Right-handed alpha
Helix 8	AA8	A	152	165	Right-handed alpha
Helix 9	AA9	A	173	184	Right-handed alpha
Helix 10	AB1	A	194	202	Right-handed alpha
Helix 11	AB2	A	230	244	Right-handed alpha
Helix 12	AB3	A	245	256	Right-handed alpha
Helix 13	AB4	B	22	26	Right-handed 310
Helix 14	AB5	B	27	30	Right-handed 310
Helix 15	AB6	B	34	48	Right-handed alpha
Helix 16	AB7	B	72	80	Right-handed alpha
Helix 17	AB8	B	93	98	Right-handed alpha
Helix 18	AB9	B	123	129	Right-handed alpha
Helix 19	AC1	B	141	150	Right-handed alpha
Helix 20	AC2	B	152	165	Right-handed alpha
Helix 21	AC3	B	173	184	Right-handed alpha
Helix 22	AC4	B	194	202	Right-handed alpha
Helix 23	AC5	B	230	244	Right-handed alpha
Helix 24	AC6	B	245	255	Right-handed alpha
Helix 25	AC7	C	22	26	Right-handed 310
Helix 26	AC8	C	27	30	Right-handed 310
Helix 27	AC9	C	34	48	Right-handed alpha
Helix 28	AD1	C	72	80	Right-handed alpha
Helix 29	AD2	C	93	98	Right-handed alpha
Helix 30	AD3	C	123	129	Right-handed alpha
Helix 31	AD4	C	141	150	Right-handed alpha
Helix 32	AD5	C	152	165	Right-handed alpha
Helix 33	AD6	C	173	184	Right-handed alpha
Helix 34	AD7	C	194	202	Right-handed alpha
Helix 35	AD8	C	230	244	Right-handed alpha
Helix 36	AD9	C	245	256	Right-handed alpha
Helix 37	AE1	D	22	26	Right-handed 310
Helix 38	AE2	D	27	30	Right-handed 310
Helix 39	AE3	D	34	48	Right-handed alpha
Helix 40	AE4	D	72	80	Right-handed alpha
Helix 41	AE5	D	93	98	Right-handed alpha
Helix 42	AE6	D	123	129	Right-handed alpha
Helix 43	AE7	D	141	150	Right-handed alpha
Helix 44	AE8	D	152	165	Right-handed alpha
Helix 45	AE9	D	173	184	Right-handed alpha
Helix 46	AF1	D	194	202	Right-handed alpha
Helix 47	AF2	D	230	244	Right-handed alpha
Helix 48	AF3	D	245	255	Right-handed alpha

There are 20 sheets in PDB entry 5O9A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	55	first strand
Strand 2	A	6	10	parallel
Strand 3	A	85	86	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	A	32	33	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	223	225	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	109	first strand
Strand 2	A	218	220	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	137	first strand
Strand 2	A	188	193	parallel
Strand 3	A	111	116	anti-parallel
Strand 4	A	208	211	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	55	first strand
Strand 2	B	5	10	parallel
Strand 3	B	85	86	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	19	first strand
Strand 2	B	32	33	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	223	225	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	109	first strand
Strand 2	B	218	220	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	136	first strand
Strand 2	B	188	193	parallel
Strand 3	B	111	116	anti-parallel
Strand 4	B	208	211	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	55	first strand
Strand 2	C	6	10	parallel
Strand 3	C	85	86	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	19	first strand
Strand 2	C	32	33	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	223	225	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	109	first strand
Strand 2	C	218	220	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	137	first strand
Strand 2	C	188	193	parallel
Strand 3	C	111	116	anti-parallel
Strand 4	C	208	211	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	55	first strand
Strand 2	D	5	10	parallel
Strand 3	D	85	86	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	19	first strand
Strand 2	D	32	33	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	102	first strand
Strand 2	D	223	225	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	109	first strand
Strand 2	D	218	220	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	137	first strand
Strand 2	D	188	193	parallel
Strand 3	D	111	116	anti-parallel
Strand 4	D	208	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O9A

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O9A