Analysis of interatomic Contacts of Structural Units in PDB entry:
5O9C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O9C entry

There are 4 chains in PDB entry 5O9C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASP 7	PHE 354
A	ASP 7	PHE 354
D	ASP 7	PHE 354
B	ASP 7	ASN 240

There are 32 helices in PDB entry 5O9C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	98	103	Right-handed alpha
Helix 2	AA2	C	104	106	Right-handed 310
Helix 3	AA3	C	120	123	Right-handed 310
Helix 4	AA4	C	168	172	Right-handed 310
Helix 5	AA5	C	201	207	Right-handed alpha
Helix 6	AA6	C	294	298	Right-handed 310
Helix 7	AA7	C	332	339	Right-handed alpha
Helix 8	AA8	A	98	103	Right-handed alpha
Helix 9	AA9	A	104	106	Right-handed 310
Helix 10	AB1	A	120	123	Right-handed 310
Helix 11	AB2	A	135	140	Right-handed 310
Helix 12	AB3	A	168	172	Right-handed 310
Helix 13	AB4	A	201	207	Right-handed alpha
Helix 14	AB5	A	294	298	Right-handed 310
Helix 15	AB6	A	332	339	Right-handed alpha
Helix 16	AB7	D	84	86	Right-handed 310
Helix 17	AB8	D	98	103	Right-handed alpha
Helix 18	AB9	D	104	106	Right-handed 310
Helix 19	AC1	D	120	123	Right-handed 310
Helix 20	AC2	D	135	140	Right-handed 310
Helix 21	AC3	D	168	172	Right-handed 310
Helix 22	AC4	D	201	207	Right-handed alpha
Helix 23	AC5	D	294	298	Right-handed 310
Helix 24	AC6	D	332	339	Right-handed alpha
Helix 25	AC7	B	98	103	Right-handed alpha
Helix 26	AC8	B	104	106	Right-handed 310
Helix 27	AC9	B	120	123	Right-handed 310
Helix 28	AD1	B	135	140	Right-handed 310
Helix 29	AD2	B	168	172	Right-handed 310
Helix 30	AD3	B	201	207	Right-handed alpha
Helix 31	AD4	B	294	298	Right-handed 310
Helix 32	AD5	B	332	339	Right-handed alpha

There are 8 sheets in PDB entry 5O9C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	32	first strand
Strand 2	C	9	23	anti-parallel
Strand 3	C	345	354	anti-parallel
Strand 4	C	318	327	anti-parallel
Strand 5	C	300	315	anti-parallel
Strand 6	C	280	292	anti-parallel
Strand 7	C	264	274	anti-parallel
Strand 8	C	241	251	anti-parallel
Strand 9	C	226	238	anti-parallel
Strand 10	C	189	199	anti-parallel
Strand 11	C	176	185	anti-parallel
Strand 12	C	144	151	anti-parallel
Strand 13	C	125	134	anti-parallel
Strand 14	C	88	95	anti-parallel
Strand 15	C	72	83	anti-parallel
Strand 16	C	50	61	anti-parallel
Strand 17	C	35	45	anti-parallel
Strand 18	C	9	23	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	217	219	anti-parallel

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There are 18 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	9	24	anti-parallel
Strand 3	A	345	354	anti-parallel
Strand 4	A	318	327	anti-parallel
Strand 5	A	300	315	anti-parallel
Strand 6	A	280	292	anti-parallel
Strand 7	A	264	274	anti-parallel
Strand 8	A	241	251	anti-parallel
Strand 9	A	226	238	anti-parallel
Strand 10	A	189	199	anti-parallel
Strand 11	A	176	185	anti-parallel
Strand 12	A	145	151	anti-parallel
Strand 13	A	125	134	anti-parallel
Strand 14	A	88	95	anti-parallel
Strand 15	A	72	83	anti-parallel
Strand 16	A	50	61	anti-parallel
Strand 17	A	35	45	anti-parallel
Strand 18	A	9	24	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	217	219	anti-parallel

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There are 18 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	32	first strand
Strand 2	D	9	24	anti-parallel
Strand 3	D	345	354	anti-parallel
Strand 4	D	318	327	anti-parallel
Strand 5	D	300	315	anti-parallel
Strand 6	D	280	292	anti-parallel
Strand 7	D	264	274	anti-parallel
Strand 8	D	241	251	anti-parallel
Strand 9	D	226	238	anti-parallel
Strand 10	D	189	199	anti-parallel
Strand 11	D	176	184	anti-parallel
Strand 12	D	144	151	anti-parallel
Strand 13	D	125	134	anti-parallel
Strand 14	D	88	95	anti-parallel
Strand 15	D	72	82	anti-parallel
Strand 16	D	50	61	anti-parallel
Strand 17	D	35	47	anti-parallel
Strand 18	D	9	24	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	217	219	anti-parallel

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There are 18 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	B	9	24	anti-parallel
Strand 3	B	345	353	anti-parallel
Strand 4	B	318	327	anti-parallel
Strand 5	B	300	315	anti-parallel
Strand 6	B	280	292	anti-parallel
Strand 7	B	264	274	anti-parallel
Strand 8	B	241	251	anti-parallel
Strand 9	B	226	238	anti-parallel
Strand 10	B	189	199	anti-parallel
Strand 11	B	176	184	anti-parallel
Strand 12	B	144	151	anti-parallel
Strand 13	B	125	134	anti-parallel
Strand 14	B	88	95	anti-parallel
Strand 15	B	72	82	anti-parallel
Strand 16	B	51	61	anti-parallel
Strand 17	B	35	45	anti-parallel
Strand 18	B	9	24	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	217	219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O9C

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O9C