Analysis of interatomic Contacts of Structural Units in PDB entry:
5O9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O9E entry

There are 2 chains in PDB entry 5O9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 74GLU 274
B
 ALA 475PRO 562
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5O9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
97 111Right-handed alpha
Helix 2
AA2
A
123 134Right-handed alpha
Helix 3
AA3
A
172 176Right-handed 310
Helix 4
AA4
A
198 210Right-handed alpha
Helix 5
AA5
A
219 223Right-handed 310
Helix 6
AA6
B
476 504Right-handed alpha
Helix 7
AA7
B
534 552Right-handed alpha
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There are 2 sheets in PDB entry 5O9E. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
88 92parallel
Strand 3
A
138 145parallel
Strand 4
A
148 156anti-parallel
Strand 5
A
162 171anti-parallel
Strand 6
A
260 269anti-parallel
Strand 7
A
236 248anti-parallel
Strand 8
A
251 256anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 194first strand
Strand 2
A
226 233parallel
Strand 3
A
236 248anti-parallel
Strand 4
A
260 269anti-parallel
Strand 5
B
521 522anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il