Analysis of interatomic Contacts of Structural Units in PDB entry:
5O9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O9J entry

There are 2 chains in PDB entry 5O9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 0ALA 181
B
 GLY -1ALA 181
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5O9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 31Right-handed alpha
Helix 2
AA2
A
109 111Right-handed 310
Helix 3
AA3
B
21 31Right-handed alpha
Helix 4
AA4
B
109 111Right-handed 310
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There are 9 sheets in PDB entry 5O9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
157 162anti-parallel
Strand 3
A
67 72anti-parallel
Strand 4
A
41 45anti-parallel
Strand 5
A
35 38anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
7 12anti-parallel
Strand 3
A
49 54anti-parallel
Strand 4
A
60 64anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 89first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
140 151anti-parallel
Strand 4
A
116 120anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
93 99anti-parallel
Strand 3
A
177 180anti-parallel
Strand 4
A
124 128parallel
Strand 5
A
168 173anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
157 162anti-parallel
Strand 3
B
67 72anti-parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
35 38anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 20first strand
Strand 2
B
7 11anti-parallel
Strand 3
B
50 54anti-parallel
Strand 4
B
60 64anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 89first strand
Strand 2
B
76 81anti-parallel
Strand 3
B
140 151anti-parallel
Strand 4
B
116 120anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 99first strand
Strand 2
B
102 107anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 173first strand
Strand 2
B
124 128anti-parallel
Strand 3
B
177 179parallel
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