Analysis of interatomic Contacts of Structural Units in PDB entry:
5O9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O9M entry

There are 2 chains in PDB entry 5O9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 178
B
 MET 1HIS 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5O9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 77Right-handed alpha
Helix 2
AA2
A
84 107Right-handed alpha
Helix 3
AA3
A
110 128Right-handed alpha
Helix 4
AA4
A
129 132Right-handed 310
Helix 5
AA5
B
55 59Right-handed 310
Helix 6
AA6
B
71 76Right-handed alpha
Helix 7
AA7
B
84 107Right-handed alpha
Helix 8
AA8
B
110 128Right-handed alpha
Helix 9
AA9
B
129 132Right-handed 310
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There are 6 sheets in PDB entry 5O9M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
167 171anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 23first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
158 163anti-parallel
Strand 4
A
146 151anti-parallel
Strand 5
A
133 136anti-parallel
Strand 6
A
79 81anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
65 70anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 15first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
167 171anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 23first strand
Strand 2
B
28 32anti-parallel
Strand 3
B
158 163anti-parallel
Strand 4
B
147 151anti-parallel
Strand 5
B
133 136anti-parallel
Strand 6
B
79 81anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
69 70anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il