Analysis of interatomic Contacts of Structural Units in PDB entry:
5O9W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O9W entry

There is 1 chain in PDB entry 5O9W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ILE 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5O9W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-1 8Right-handed alpha
Helix 2
AA2
A
17 23Right-handed alpha
Helix 3
AA3
A
30 34Right-handed 310
Helix 4
AA4
A
60 64Right-handed alpha
Helix 5
AA5
A
67 85Right-handed alpha
Helix 6
AA6
A
96 112Right-handed alpha
Helix 7
AA7
A
114 119Right-handed alpha
Helix 8
AA8
A
155 159Right-handed 310
Helix 9
AA9
A
160 167Right-handed alpha
Helix 10
AB1
A
168 197Right-handed alpha
Helix 11
AB2
A
207 212Right-handed alpha
Helix 12
AB3
A
279 286Right-handed alpha
Helix 13
AB4
A
323 327Right-handed 310
Helix 14
AB5
A
341 350Right-handed alpha
Helix 15
AB6
A
357 362Right-handed alpha
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There are 3 sheets in PDB entry 5O9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
87 91parallel
Strand 3
A
274 278anti-parallel
Strand 4
A
244 249anti-parallel
Strand 5
A
305 313anti-parallel
Strand 6
A
215 223anti-parallel
Strand 7
A
147 154anti-parallel
Strand 8
A
130 131anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 238first strand
Strand 2
A
295 297anti-parallel
Strand 3
A
256 260anti-parallel
Strand 4
A
263 266anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 320first strand
Strand 2
A
339 340anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il