Analysis of interatomic Contacts of Structural Units in PDB entry:
5O9X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O9X entry

There is 1 chain in PDB entry 5O9X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2VAL 542
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5O9X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
39 57Right-handed alpha
Helix 3
AA3
A
90 102Right-handed alpha
Helix 4
AA4
A
103 105Right-handed 310
Helix 5
AA5
A
106 119Right-handed alpha
Helix 6
AA6
A
137 152Right-handed alpha
Helix 7
AA7
A
163 177Right-handed alpha
Helix 8
AA8
A
187 203Right-handed alpha
Helix 9
AA9
A
220 232Right-handed alpha
Helix 10
AB1
A
249 253Right-handed 310
Helix 11
AB2
A
258 266Right-handed alpha
Helix 12
AB3
A
305 324Right-handed alpha
Helix 13
AB4
A
326 330Right-handed 310
Helix 14
AB5
A
341 351Right-handed alpha
Helix 15
AB6
A
362 371Right-handed alpha
Helix 16
AB7
A
390 400Right-handed alpha
Helix 17
AB8
A
404 421Right-handed alpha
Helix 18
AB9
A
427 443Right-handed alpha
Helix 19
AC1
A
445 452Right-handed alpha
Helix 20
AC2
A
467 471Right-handed 310
Helix 21
AC3
A
485 496Right-handed alpha
Helix 22
AC4
A
521 540Right-handed alpha
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There are 5 sheets in PDB entry 5O9X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
75 81anti-parallel
Strand 3
A
61 66anti-parallel
Strand 4
A
127 132parallel
Strand 5
A
155 161parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
212 215parallel
Strand 3
A
279 283parallel
Strand 4
A
290 295anti-parallel
Strand 5
A
301 304anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 359first strand
Strand 2
A
332 337parallel
Strand 3
A
375 379parallel
Strand 4
A
385 389anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 463first strand
Strand 2
A
513 518anti-parallel
Strand 3
A
501 506anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 474first strand
Strand 2
A
479 482anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il