Analysis of interatomic Contacts of Structural Units in PDB entry:
5OA2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OA2 entry

There are 3 chains in PDB entry 5OA2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 29ASP 494
B
 SER 29PHE 493
C
 SER 29LEU 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5OA2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 84Right-handed 310
Helix 2
AA2
A
85 100Right-handed alpha
Helix 3
AA3
A
115 125Right-handed alpha
Helix 4
AA4
A
148 163Right-handed alpha
Helix 5
AA5
A
183 185Right-handed 310
Helix 6
AA6
A
186 203Right-handed alpha
Helix 7
AA7
A
221 229Right-handed alpha
Helix 8
AA8
A
251 256Right-handed alpha
Helix 9
AA9
A
256 265Right-handed alpha
Helix 10
AB1
A
287 293Right-handed alpha
Helix 11
AB2
A
294 299Right-handed alpha
Helix 12
AB3
A
330 343Right-handed alpha
Helix 13
AB4
A
349 354Right-handed alpha
Helix 14
AB5
A
386 397Right-handed alpha
Helix 15
AB6
A
410 422Right-handed alpha
Helix 16
AB7
A
424 427Right-handed 310
Helix 17
AB8
A
443 460Right-handed alpha
Helix 18
AB9
A
477 481Right-handed 310
Helix 19
AC1
B
81 84Right-handed 310
Helix 20
AC2
B
85 100Right-handed alpha
Helix 21
AC3
B
115 125Right-handed alpha
Helix 22
AC4
B
148 163Right-handed alpha
Helix 23
AC5
B
183 185Right-handed 310
Helix 24
AC6
B
186 204Right-handed alpha
Helix 25
AC7
B
221 229Right-handed alpha
Helix 26
AC8
B
251 256Right-handed alpha
Helix 27
AC9
B
256 265Right-handed alpha
Helix 28
AD1
B
287 293Right-handed alpha
Helix 29
AD2
B
294 299Right-handed alpha
Helix 30
AD3
B
330 343Right-handed alpha
Helix 31
AD4
B
349 354Right-handed alpha
Helix 32
AD5
B
386 397Right-handed alpha
Helix 33
AD6
B
410 420Right-handed alpha
Helix 34
AD7
B
443 460Right-handed alpha
Helix 35
AD8
B
477 481Right-handed 310
Helix 36
AD9
C
81 84Right-handed 310
Helix 37
AE1
C
85 100Right-handed alpha
Helix 38
AE2
C
115 125Right-handed alpha
Helix 39
AE3
C
148 163Right-handed alpha
Helix 40
AE4
C
183 185Right-handed 310
Helix 41
AE5
C
186 204Right-handed alpha
Helix 42
AE6
C
221 229Right-handed alpha
Helix 43
AE7
C
251 256Right-handed alpha
Helix 44
AE8
C
256 265Right-handed alpha
Helix 45
AE9
C
287 294Right-handed alpha
Helix 46
AF1
C
294 299Right-handed alpha
Helix 47
AF2
C
330 343Right-handed alpha
Helix 48
AF3
C
349 355Right-handed alpha
Helix 49
AF4
C
386 397Right-handed alpha
Helix 50
AF5
C
408 420Right-handed alpha
Helix 51
AF6
C
424 427Right-handed 310
Helix 52
AF7
C
443 460Right-handed alpha
Helix 53
AF8
C
477 481Right-handed 310
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There are 15 sheets in PDB entry 5OA2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
42 45anti-parallel
Strand 3
A
51 52anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
103 106parallel
Strand 3
A
128 132parallel
Strand 4
A
168 175parallel
Strand 5
A
211 215parallel
Strand 6
A
239 242parallel
Strand 7
A
271 275parallel
Strand 8
A
303 306parallel
Strand 9
A
54 58parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 321first strand
Strand 2
A
327 329anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 401first strand
Strand 2
A
473 475anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 430first strand
Strand 2
A
435 436anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
42 45anti-parallel
Strand 3
B
51 52anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 58first strand
Strand 2
B
103 106parallel
Strand 3
B
128 132parallel
Strand 4
B
168 175parallel
Strand 5
B
211 215parallel
Strand 6
B
239 243parallel
Strand 7
B
271 276parallel
Strand 8
B
303 306parallel
Strand 9
B
54 58parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
319 321first strand
Strand 2
B
327 329anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
399 401first strand
Strand 2
B
473 475anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
429 430first strand
Strand 2
B
435 436anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 39first strand
Strand 2
C
42 45anti-parallel
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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 58first strand
Strand 2
C
103 106parallel
Strand 3
C
128 132parallel
Strand 4
C
168 175parallel
Strand 5
C
211 215parallel
Strand 6
C
239 243parallel
Strand 7
C
271 276parallel
Strand 8
C
303 306parallel
Strand 9
C
54 58parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
319 321first strand
Strand 2
C
327 329anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
399 401first strand
Strand 2
C
473 475anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
429 430first strand
Strand 2
C
435 436anti-parallel
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