Analysis of interatomic Contacts of Structural Units in PDB entry:
5OA5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OA5 entry

There are 2 chains in PDB entry 5OA5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	GLY 434
B	SER 2	GLY 434

There are 20 helices in PDB entry 5OA5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	39	Right-handed 310
Helix 2	AA2	A	63	70	Right-handed alpha
Helix 3	AA3	A	77	83	Right-handed alpha
Helix 4	AA4	A	163	168	Right-handed 310
Helix 5	AA5	A	241	244	Right-handed 310
Helix 6	AA6	A	327	339	Right-handed alpha
Helix 7	AA7	A	341	346	Right-handed alpha
Helix 8	AA8	A	347	357	Right-handed alpha
Helix 9	AA9	A	374	379	Right-handed alpha
Helix 10	AB1	A	403	411	Right-handed alpha
Helix 11	AB2	B	36	39	Right-handed 310
Helix 12	AB3	B	63	70	Right-handed alpha
Helix 13	AB4	B	77	83	Right-handed alpha
Helix 14	AB5	B	163	168	Right-handed 310
Helix 15	AB6	B	241	244	Right-handed 310
Helix 16	AB7	B	327	339	Right-handed alpha
Helix 17	AB8	B	341	346	Right-handed alpha
Helix 18	AB9	B	347	357	Right-handed alpha
Helix 19	AC1	B	374	379	Right-handed alpha
Helix 20	AC2	B	403	411	Right-handed alpha

There are 16 sheets in PDB entry 5OA5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	312	first strand
Strand 2	A	300	306	anti-parallel
Strand 3	A	288	294	anti-parallel
Strand 4	A	125	131	anti-parallel
Strand 5	A	422	425	anti-parallel
Strand 6	A	13	19	parallel
Strand 7	A	25	34	anti-parallel
Strand 8	A	106	111	anti-parallel
Strand 9	A	361	367	anti-parallel
Strand 10	A	141	147	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	71	73	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	90	94	anti-parallel
Strand 3	A	415	419	anti-parallel
Strand 4	A	130	132	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	102	104	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	121	first strand
Strand 2	A	359	361	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	209	first strand
Strand 2	A	236	239	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	225	228	anti-parallel
Strand 3	A	261	263	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	318	first strand
Strand 2	A	321	323	anti-parallel

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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	312	first strand
Strand 2	B	300	306	anti-parallel
Strand 3	B	288	294	anti-parallel
Strand 4	B	125	131	anti-parallel
Strand 5	B	422	425	anti-parallel
Strand 6	B	12	19	parallel
Strand 7	B	25	34	anti-parallel
Strand 8	B	106	111	anti-parallel
Strand 9	B	361	367	anti-parallel
Strand 10	B	141	147	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	71	73	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	90	94	anti-parallel
Strand 3	B	415	419	anti-parallel
Strand 4	B	130	132	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	102	104	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	121	first strand
Strand 2	B	359	361	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	209	first strand
Strand 2	B	236	239	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	214	first strand
Strand 2	B	225	228	anti-parallel
Strand 3	B	261	263	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	318	first strand
Strand 2	B	321	323	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OA5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OA5