Analysis of interatomic Contacts of Structural Units in PDB entry:
5OAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OAD entry

There are 5 chains in PDB entry 5OAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 20ARG 225
B
 GLN 20ARG 224
C
 GLN 20ARG 225
D
 GLN 20ARG 224
E
 GLN 20ALA 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5OAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 32Right-handed alpha
Helix 2
AA2
A
85 90Right-handed 310
Helix 3
AA3
A
100 102Right-handed 310
Helix 4
AA4
B
21 32Right-handed alpha
Helix 5
AA5
B
85 90Right-handed 310
Helix 6
AA6
B
100 102Right-handed 310
Helix 7
AA7
C
21 32Right-handed alpha
Helix 8
AA8
C
85 90Right-handed 310
Helix 9
AA9
C
100 102Right-handed 310
Helix 10
AB1
D
21 32Right-handed alpha
Helix 11
AB2
D
85 90Right-handed 310
Helix 12
AB3
D
100 102Right-handed 310
Helix 13
AB4
E
21 32Right-handed alpha
Helix 14
AB5
E
85 90Right-handed 310
Helix 15
AB6
E
100 102Right-handed 310
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There are 15 sheets in PDB entry 5OAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
123 127anti-parallel
Strand 3
A
129 134anti-parallel
Strand 4
A
66 83anti-parallel
Strand 5
A
137 143anti-parallel
Strand 6
A
117 118anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
123 127anti-parallel
Strand 3
A
129 134anti-parallel
Strand 4
A
66 83anti-parallel
Strand 5
A
46 61anti-parallel
Strand 6
A
171 174parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
155 163anti-parallel
Strand 3
A
212 223anti-parallel
Strand 4
A
191 203anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 98first strand
Strand 2
B
123 127anti-parallel
Strand 3
B
129 134anti-parallel
Strand 4
B
66 83anti-parallel
Strand 5
B
137 143anti-parallel
Strand 6
B
117 118anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 98first strand
Strand 2
B
123 127anti-parallel
Strand 3
B
129 134anti-parallel
Strand 4
B
66 83anti-parallel
Strand 5
B
46 61anti-parallel
Strand 6
B
171 174parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 109first strand
Strand 2
B
155 163anti-parallel
Strand 3
B
212 223anti-parallel
Strand 4
B
191 203anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 98first strand
Strand 2
C
123 127anti-parallel
Strand 3
C
129 134anti-parallel
Strand 4
C
66 83anti-parallel
Strand 5
C
137 143anti-parallel
Strand 6
C
117 118anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 98first strand
Strand 2
C
123 127anti-parallel
Strand 3
C
129 134anti-parallel
Strand 4
C
66 83anti-parallel
Strand 5
C
46 61anti-parallel
Strand 6
C
171 175parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 109first strand
Strand 2
C
155 163anti-parallel
Strand 3
C
212 223anti-parallel
Strand 4
C
191 203anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
94 98first strand
Strand 2
D
123 127anti-parallel
Strand 3
D
129 134anti-parallel
Strand 4
D
66 83anti-parallel
Strand 5
D
137 143anti-parallel
Strand 6
D
117 118anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
94 98first strand
Strand 2
D
123 127anti-parallel
Strand 3
D
129 134anti-parallel
Strand 4
D
66 83anti-parallel
Strand 5
D
46 61anti-parallel
Strand 6
D
171 174parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
107 109first strand
Strand 2
D
155 163anti-parallel
Strand 3
D
212 223anti-parallel
Strand 4
D
191 203anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
94 98first strand
Strand 2
E
123 127anti-parallel
Strand 3
E
129 134anti-parallel
Strand 4
E
66 83anti-parallel
Strand 5
E
137 143anti-parallel
Strand 6
E
117 118anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
94 98first strand
Strand 2
E
123 127anti-parallel
Strand 3
E
129 134anti-parallel
Strand 4
E
66 83anti-parallel
Strand 5
E
46 61anti-parallel
Strand 6
E
171 174parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
107 109first strand
Strand 2
E
155 163anti-parallel
Strand 3
E
212 223anti-parallel
Strand 4
E
191 203anti-parallel
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