Analysis of interatomic Contacts of Structural Units in PDB entry:
5OAF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OAF entry

There are 6 chains in PDB entry 5OAF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 11	ASP 452
B	VAL 16	ALA 449
C	LYS 11	ASP 452
D	VAL 16	ALA 449
E	LYS 11	ASP 452
F	VAL 16	LEU 451

There are104 helices in PDB entry 5OAF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	59	Right-handed alpha
Helix 2	AA2	A	75	88	Right-handed alpha
Helix 3	AA3	A	107	120	Right-handed alpha
Helix 4	AA4	A	173	182	Right-handed alpha
Helix 5	AA5	A	240	249	Right-handed alpha
Helix 6	AA6	A	256	263	Right-handed alpha
Helix 7	AA7	A	273	289	Right-handed alpha
Helix 8	AA8	A	303	307	Right-handed 310
Helix 9	AA9	A	308	320	Right-handed alpha
Helix 10	AB1	A	347	350	Right-handed 310
Helix 11	AB2	A	351	356	Right-handed alpha
Helix 12	AB3	A	367	369	Right-handed 310
Helix 13	AB4	A	370	383	Right-handed alpha
Helix 14	AB5	A	387	401	Right-handed alpha
Helix 15	AB6	A	402	421	Right-handed alpha
Helix 16	AB7	A	426	437	Right-handed alpha
Helix 17	AB8	A	439	447	Right-handed alpha
Helix 18	AB9	B	49	66	Right-handed alpha
Helix 19	AC1	B	82	93	Right-handed alpha
Helix 20	AC2	B	114	127	Right-handed alpha
Helix 21	AC3	B	178	185	Right-handed alpha
Helix 22	AC4	B	205	211	Right-handed alpha
Helix 23	AC5	B	245	252	Right-handed alpha
Helix 24	AC6	B	254	261	Right-handed alpha
Helix 25	AC7	B	270	284	Right-handed alpha
Helix 26	AC8	B	305	318	Right-handed alpha
Helix 27	AC9	B	343	346	Right-handed 310
Helix 28	AD1	B	347	354	Right-handed alpha
Helix 29	AD2	B	363	378	Right-handed alpha
Helix 30	AD3	B	383	397	Right-handed alpha
Helix 31	AD4	B	398	416	Right-handed alpha
Helix 32	AD5	B	422	433	Right-handed alpha
Helix 33	AD6	B	435	440	Right-handed alpha
Helix 34	AD7	B	441	446	Right-handed 310
Helix 35	AD8	C	42	59	Right-handed alpha
Helix 36	AD9	C	75	88	Right-handed alpha
Helix 37	AE1	C	107	120	Right-handed alpha
Helix 38	AE2	C	173	183	Right-handed alpha
Helix 39	AE3	C	240	249	Right-handed alpha
Helix 40	AE4	C	254	263	Right-handed alpha
Helix 41	AE5	C	271	276	Right-handed alpha
Helix 42	AE6	C	276	290	Right-handed alpha
Helix 43	AE7	C	303	307	Right-handed 310
Helix 44	AE8	C	308	321	Right-handed alpha
Helix 45	AE9	C	351	358	Right-handed alpha
Helix 46	AF1	C	367	383	Right-handed alpha
Helix 47	AF2	C	387	401	Right-handed alpha
Helix 48	AF3	C	402	409	Right-handed alpha
Helix 49	AF4	C	409	421	Right-handed alpha
Helix 50	AF5	C	426	437	Right-handed alpha
Helix 51	AF6	C	439	447	Right-handed alpha
Helix 52	AF7	D	24	28	Right-handed 310
Helix 53	AF8	D	42	46	Right-handed 310
Helix 54	AF9	D	49	66	Right-handed alpha
Helix 55	AG1	D	82	93	Right-handed alpha
Helix 56	AG2	D	105	109	Right-handed alpha
Helix 57	AG3	D	114	127	Right-handed alpha
Helix 58	AG4	D	175	185	Right-handed alpha
Helix 59	AG5	D	222	226	Right-handed 310
Helix 60	AG6	D	245	252	Right-handed alpha
Helix 61	AG7	D	254	261	Right-handed alpha
Helix 62	AG8	D	271	286	Right-handed alpha
Helix 63	AG9	D	300	304	Right-handed 310
Helix 64	AH1	D	305	316	Right-handed alpha
Helix 65	AH2	D	343	346	Right-handed 310
Helix 66	AH3	D	347	354	Right-handed alpha
Helix 67	AH4	D	363	378	Right-handed alpha
Helix 68	AH5	D	385	397	Right-handed alpha
Helix 69	AH6	D	398	416	Right-handed alpha
Helix 70	AH7	D	422	433	Right-handed alpha
Helix 71	AH8	D	435	442	Right-handed alpha
Helix 72	AH9	D	443	446	Right-handed 310
Helix 73	AI1	E	42	59	Right-handed alpha
Helix 74	AI2	E	75	88	Right-handed alpha
Helix 75	AI3	E	97	102	Right-handed 310
Helix 76	AI4	E	107	120	Right-handed alpha
Helix 77	AI5	E	174	183	Right-handed alpha
Helix 78	AI6	E	240	249	Right-handed alpha
Helix 79	AI7	E	256	263	Right-handed alpha
Helix 80	AI8	E	271	290	Right-handed alpha
Helix 81	AI9	E	308	320	Right-handed alpha
Helix 82	AJ1	E	347	350	Right-handed 310
Helix 83	AJ2	E	351	358	Right-handed alpha
Helix 84	AJ3	E	369	383	Right-handed alpha
Helix 85	AJ4	E	387	401	Right-handed alpha
Helix 86	AJ5	E	402	409	Right-handed alpha
Helix 87	AJ6	E	409	421	Right-handed alpha
Helix 88	AJ7	E	426	437	Right-handed alpha
Helix 89	AJ8	E	439	444	Right-handed alpha
Helix 90	AJ9	F	49	66	Right-handed alpha
Helix 91	AK1	F	82	94	Right-handed alpha
Helix 92	AK2	F	114	126	Right-handed alpha
Helix 93	AK3	F	176	185	Right-handed alpha
Helix 94	AK4	F	245	252	Right-handed alpha
Helix 95	AK5	F	254	261	Right-handed alpha
Helix 96	AK6	F	268	287	Right-handed alpha
Helix 97	AK7	F	305	318	Right-handed alpha
Helix 98	AK8	F	342	346	Right-handed 310
Helix 99	AK9	F	347	352	Right-handed alpha
Helix 100	AL1	F	363	376	Right-handed alpha
Helix 101	AL2	F	385	397	Right-handed alpha
Helix 102	AL3	F	398	416	Right-handed alpha
Helix 103	AL4	F	422	433	Right-handed alpha
Helix 104	AL5	F	435	442	Right-handed alpha

There are 32 sheets in PDB entry 5OAF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	39	40	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	97	first strand
Strand 2	A	298	302	parallel
Strand 3	A	326	331	parallel
Strand 4	A	65	69	parallel
Strand 5	A	361	362	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	172	first strand
Strand 2	A	157	163	anti-parallel
Strand 3	A	121	137	anti-parallel
Strand 4	A	229	239	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	201	first strand
Strand 2	A	189	193	anti-parallel
Strand 3	A	121	137	anti-parallel
Strand 4	A	292	295	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	337	first strand
Strand 2	A	345	346	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	B	46	47	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	104	first strand
Strand 2	B	295	299	parallel
Strand 3	B	323	328	parallel
Strand 4	B	72	77	parallel
Strand 5	B	355	359	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	243	first strand
Strand 2	B	128	132	anti-parallel
Strand 3	B	289	292	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	164	first strand
Strand 2	B	169	171	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	195	first strand
Strand 2	B	201	203	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	334	first strand
Strand 2	B	341	342	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	39	40	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	97	first strand
Strand 2	C	298	302	parallel
Strand 3	C	326	331	parallel
Strand 4	C	65	69	parallel
Strand 5	C	359	362	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	201	first strand
Strand 2	C	191	194	anti-parallel
Strand 3	C	121	131	anti-parallel
Strand 4	C	229	239	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	201	first strand
Strand 2	C	191	194	anti-parallel
Strand 3	C	121	131	anti-parallel
Strand 4	C	293	295	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	137	first strand
Strand 2	C	157	163	anti-parallel
Strand 3	C	166	172	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	337	first strand
Strand 2	C	345	347	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	104	first strand
Strand 2	D	295	299	parallel
Strand 3	D	324	328	parallel
Strand 4	D	72	77	parallel
Strand 5	D	355	359	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	243	first strand
Strand 2	D	128	131	anti-parallel
Strand 3	D	289	292	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	203	first strand
Strand 2	D	193	196	anti-parallel
Strand 3	D	134	138	anti-parallel
Strand 4	D	235	237	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	145	first strand
Strand 2	D	160	164	anti-parallel
Strand 3	D	169	172	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	334	first strand
Strand 2	D	341	342	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	E	39	40	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	95	first strand
Strand 2	E	298	301	parallel
Strand 3	E	326	331	parallel
Strand 4	E	65	69	parallel
Strand 5	E	359	362	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	193	194	first strand
Strand 2	E	121	131	anti-parallel
Strand 3	E	230	239	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	193	194	first strand
Strand 2	E	121	131	anti-parallel
Strand 3	E	292	295	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	163	first strand
Strand 2	E	166	172	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	336	337	first strand
Strand 2	E	345	346	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	104	first strand
Strand 2	F	295	299	parallel
Strand 3	F	323	327	parallel
Strand 4	F	72	76	parallel
Strand 5	F	355	358	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	200	203	first strand
Strand 2	F	193	196	anti-parallel
Strand 3	F	128	140	anti-parallel
Strand 4	F	235	242	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	200	203	first strand
Strand 2	F	193	196	anti-parallel
Strand 3	F	128	140	anti-parallel
Strand 4	F	289	292	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	143	145	first strand
Strand 2	F	160	164	anti-parallel
Strand 3	F	169	173	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OAF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OAF