Analysis of interatomic Contacts of Structural Units in PDB entry:
5OAR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OAR entry

There are 4 chains in PDB entry 5OAR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 19	THR 90
B	SER 103	ILE 599
C	VAL 19	PRO 91
D	SER 103	GLN 600

There are 41 helices in PDB entry 5OAR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	72	Right-handed alpha
Helix 2	AA2	B	146	158	Right-handed alpha
Helix 3	AA3	B	197	212	Right-handed alpha
Helix 4	AA4	B	233	240	Right-handed 310
Helix 5	AA5	B	248	262	Right-handed alpha
Helix 6	AA6	B	279	284	Right-handed alpha
Helix 7	AA7	B	299	303	Right-handed 310
Helix 8	AA8	B	319	335	Right-handed alpha
Helix 9	AA9	B	348	354	Right-handed 310
Helix 10	AB1	B	355	364	Right-handed alpha
Helix 11	AB2	B	369	387	Right-handed alpha
Helix 12	AB3	B	398	403	Right-handed alpha
Helix 13	AB4	B	422	432	Right-handed alpha
Helix 14	AB5	B	457	461	Right-handed 310
Helix 15	AB6	B	488	494	Right-handed alpha
Helix 16	AB7	B	505	507	Right-handed 310
Helix 17	AB8	B	522	531	Right-handed alpha
Helix 18	AB9	B	532	543	Right-handed alpha
Helix 19	AC1	B	553	571	Right-handed alpha
Helix 20	AC2	B	580	586	Right-handed alpha
Helix 21	AC3	C	55	72	Right-handed alpha
Helix 22	AC4	D	145	158	Right-handed alpha
Helix 23	AC5	D	197	212	Right-handed alpha
Helix 24	AC6	D	235	240	Right-handed 310
Helix 25	AC7	D	248	262	Right-handed alpha
Helix 26	AC8	D	279	284	Right-handed alpha
Helix 27	AC9	D	299	303	Right-handed 310
Helix 28	AD1	D	319	335	Right-handed alpha
Helix 29	AD2	D	348	353	Right-handed alpha
Helix 30	AD3	D	355	365	Right-handed alpha
Helix 31	AD4	D	369	387	Right-handed alpha
Helix 32	AD5	D	398	403	Right-handed alpha
Helix 33	AD6	D	422	432	Right-handed alpha
Helix 34	AD7	D	440	445	Right-handed alpha
Helix 35	AD8	D	457	461	Right-handed 310
Helix 36	AD9	D	488	494	Right-handed alpha
Helix 37	AE1	D	502	507	Right-handed alpha
Helix 38	AE2	D	525	531	Right-handed alpha
Helix 39	AE3	D	532	543	Right-handed alpha
Helix 40	AE4	D	553	571	Right-handed alpha
Helix 41	AE5	D	581	586	Right-handed alpha

There are 6 sheets in PDB entry 5OAR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	B	174	178	anti-parallel
Strand 3	B	128	132	anti-parallel
Strand 4	B	138	145	anti-parallel
Strand 5	B	106	115	parallel
Strand 6	A	38	47	parallel
Strand 7	B	168	170	anti-parallel
Strand 8	B	160	162	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	190	first strand
Strand 2	B	215	219	parallel
Strand 3	B	265	272	parallel
Strand 4	B	339	343	parallel
Strand 5	B	393	397	parallel
Strand 6	B	415	418	parallel
Strand 7	B	436	438	parallel
Strand 8	B	509	516	parallel
Strand 9	B	184	190	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	289	first strand
Strand 2	B	312	313	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	D	174	178	anti-parallel
Strand 3	D	128	132	anti-parallel
Strand 4	D	138	143	anti-parallel
Strand 5	D	106	113	parallel
Strand 6	C	38	47	parallel
Strand 7	D	168	170	anti-parallel
Strand 8	D	160	162	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	190	first strand
Strand 2	D	215	219	parallel
Strand 3	D	265	272	parallel
Strand 4	D	339	343	parallel
Strand 5	D	393	397	parallel
Strand 6	D	415	418	parallel
Strand 7	D	436	438	parallel
Strand 8	D	509	516	parallel
Strand 9	D	184	190	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	289	first strand
Strand 2	D	312	313	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OAR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OAR