Analysis of interatomic Contacts of Structural Units in PDB entry:
5OAS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OAS entry

There is 1 chain in PDB entry 5OAS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -2LEU 725
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5OAS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 23Right-handed alpha
Helix 2
AA2
A
31 70Right-handed alpha
Helix 3
AA3
A
77 88Right-handed alpha
Helix 4
AA4
A
106 111Right-handed alpha
Helix 5
AA5
A
123 132Right-handed alpha
Helix 6
AA6
A
138 144Right-handed alpha
Helix 7
AA7
A
161 180Right-handed alpha
Helix 8
AA8
A
186 188Right-handed 310
Helix 9
AA9
A
214 216Right-handed 310
Helix 10
AB1
A
250 254Right-handed 310
Helix 11
AB2
A
281 297Right-handed alpha
Helix 12
AB3
A
361 378Right-handed alpha
Helix 13
AB4
A
400 419Right-handed alpha
Helix 14
AB5
A
433 438Right-handed alpha
Helix 15
AB6
A
439 447Right-handed alpha
Helix 16
AB7
A
457 469Right-handed alpha
Helix 17
AB8
A
477 483Right-handed 310
Helix 18
AB9
A
484 501Right-handed alpha
Helix 19
AC1
A
519 527Right-handed alpha
Helix 20
AC2
A
528 533Right-handed alpha
Helix 21
AC3
A
542 556Right-handed alpha
Helix 22
AC4
A
557 566Right-handed alpha
Helix 23
AC5
A
572 577Right-handed alpha
Helix 24
AC6
A
588 614Right-handed alpha
Helix 25
AC7
A
631 648Right-handed alpha
Helix 26
AC8
A
652 672Right-handed alpha
Helix 27
AC9
A
687 699Right-handed alpha
Helix 28
AD1
A
700 707Right-handed 310
Helix 29
AD2
A
708 724Right-handed alpha
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There are 7 sheets in PDB entry 5OAS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
10 13anti-parallel
Strand 3
A
347 352anti-parallel
Strand 4
A
358 360anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
268 272parallel
Strand 3
A
336 340parallel
Strand 4
A
391 395parallel
Strand 5
A
425 430parallel
Strand 6
A
451 455parallel
Strand 7
A
508 513parallel
Strand 8
A
537 540parallel
Strand 9
A
116 120parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
258 264anti-parallel
Strand 3
A
238 244anti-parallel
Strand 4
A
227 235anti-parallel
Strand 5
A
218 224anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 196first strand
Strand 2
A
199 204anti-parallel
Strand 3
A
209 210anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 305first strand
Strand 2
A
310 314anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 322first strand
Strand 2
A
328 331anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
618 621first strand
Strand 2
A
627 630anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il