Analysis of interatomic Contacts of Structural Units in PDB entry:
5OAT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OAT entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 5OAT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 156	ASN 206
A	MET 208	LEU 566
B	PRO 156	ASN 206
B	MET 208	LEU 566
C	PRO 156	ASN 206
C	MET 208	LEU 566
D	PRO 156	ASN 206
D	MET 208	LEU 566
E	PRO 156	ASN 206
E	MET 208	LEU 566
F	PRO 156	ASN 206
F	MET 208	LEU 566

There are 89 helices in PDB entry 5OAT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	158	160	Right-handed 310
Helix 2	AA2	A	207	217	Right-handed alpha
Helix 3	AA3	A	231	241	Right-handed alpha
Helix 4	AA4	A	301	305	Right-handed alpha
Helix 5	AA5	A	310	331	Right-handed alpha
Helix 6	AA6	A	359	363	Right-handed 310
Helix 7	AA7	A	390	395	Right-handed alpha
Helix 8	AA8	A	408	422	Right-handed alpha
Helix 9	AA9	A	440	444	Right-handed 310
Helix 10	AB1	A	452	463	Right-handed alpha
Helix 11	AB2	A	472	486	Right-handed alpha
Helix 12	AB3	A	487	491	Right-handed 310
Helix 13	AB4	A	499	514	Right-handed alpha
Helix 14	AB5	A	537	550	Right-handed alpha
Helix 15	AB6	A	551	564	Right-handed alpha
Helix 16	AB7	B	158	160	Right-handed 310
Helix 17	AB8	B	207	217	Right-handed alpha
Helix 18	AB9	B	231	240	Right-handed alpha
Helix 19	AC1	B	301	305	Right-handed alpha
Helix 20	AC2	B	310	331	Right-handed alpha
Helix 21	AC3	B	359	363	Right-handed 310
Helix 22	AC4	B	390	395	Right-handed alpha
Helix 23	AC5	B	408	422	Right-handed alpha
Helix 24	AC6	B	440	444	Right-handed 310
Helix 25	AC7	B	452	463	Right-handed alpha
Helix 26	AC8	B	472	486	Right-handed alpha
Helix 27	AC9	B	487	491	Right-handed 310
Helix 28	AD1	B	499	514	Right-handed alpha
Helix 29	AD2	B	537	550	Right-handed alpha
Helix 30	AD3	B	551	564	Right-handed alpha
Helix 31	AD4	C	158	160	Right-handed 310
Helix 32	AD5	C	207	217	Right-handed alpha
Helix 33	AD6	C	231	241	Right-handed alpha
Helix 34	AD7	C	301	305	Right-handed alpha
Helix 35	AD8	C	310	331	Right-handed alpha
Helix 36	AD9	C	390	395	Right-handed alpha
Helix 37	AE1	C	408	422	Right-handed alpha
Helix 38	AE2	C	440	444	Right-handed 310
Helix 39	AE3	C	452	463	Right-handed alpha
Helix 40	AE4	C	472	486	Right-handed alpha
Helix 41	AE5	C	487	491	Right-handed 310
Helix 42	AE6	C	499	514	Right-handed alpha
Helix 43	AE7	C	537	550	Right-handed alpha
Helix 44	AE8	C	551	564	Right-handed alpha
Helix 45	AE9	D	158	160	Right-handed 310
Helix 46	AF1	D	207	217	Right-handed alpha
Helix 47	AF2	D	231	240	Right-handed alpha
Helix 48	AF3	D	301	305	Right-handed alpha
Helix 49	AF4	D	310	331	Right-handed alpha
Helix 50	AF5	D	339	341	Right-handed 310
Helix 51	AF6	D	359	363	Right-handed 310
Helix 52	AF7	D	390	395	Right-handed alpha
Helix 53	AF8	D	408	422	Right-handed alpha
Helix 54	AF9	D	440	444	Right-handed 310
Helix 55	AG1	D	452	463	Right-handed alpha
Helix 56	AG2	D	472	486	Right-handed alpha
Helix 57	AG3	D	487	491	Right-handed 310
Helix 58	AG4	D	499	514	Right-handed alpha
Helix 59	AG5	D	537	550	Right-handed alpha
Helix 60	AG6	D	551	564	Right-handed alpha
Helix 61	AG7	E	158	160	Right-handed 310
Helix 62	AG8	E	207	217	Right-handed alpha
Helix 63	AG9	E	231	240	Right-handed alpha
Helix 64	AH1	E	301	305	Right-handed alpha
Helix 65	AH2	E	310	331	Right-handed alpha
Helix 66	AH3	E	339	341	Right-handed 310
Helix 67	AH4	E	390	395	Right-handed alpha
Helix 68	AH5	E	408	422	Right-handed alpha
Helix 69	AH6	E	440	444	Right-handed 310
Helix 70	AH7	E	452	463	Right-handed alpha
Helix 71	AH8	E	472	486	Right-handed alpha
Helix 72	AH9	E	487	492	Right-handed alpha
Helix 73	AI1	E	499	514	Right-handed alpha
Helix 74	AI2	E	537	550	Right-handed alpha
Helix 75	AI3	E	551	564	Right-handed alpha
Helix 76	AI4	F	158	160	Right-handed 310
Helix 77	AI5	F	207	217	Right-handed alpha
Helix 78	AI6	F	231	240	Right-handed alpha
Helix 79	AI7	F	301	305	Right-handed alpha
Helix 80	AI8	F	310	331	Right-handed alpha
Helix 81	AI9	F	390	395	Right-handed alpha
Helix 82	AJ1	F	408	422	Right-handed alpha
Helix 83	AJ2	F	440	444	Right-handed 310
Helix 84	AJ3	F	452	463	Right-handed alpha
Helix 85	AJ4	F	472	486	Right-handed alpha
Helix 86	AJ5	F	487	492	Right-handed alpha
Helix 87	AJ6	F	499	514	Right-handed alpha
Helix 88	AJ7	F	537	550	Right-handed alpha
Helix 89	AJ8	F	551	564	Right-handed alpha

There are 18 sheets in PDB entry 5OAT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	171	first strand
Strand 2	A	174	181	anti-parallel
Strand 3	A	193	198	anti-parallel
Strand 4	A	289	295	anti-parallel
Strand 5	A	253	259	anti-parallel
Strand 6	A	223	225	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	300	first strand
Strand 2	A	343	346	anti-parallel
Strand 3	A	354	357	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	374	first strand
Strand 2	A	403	405	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	170	first strand
Strand 2	B	174	181	anti-parallel
Strand 3	B	193	199	anti-parallel
Strand 4	B	289	295	anti-parallel
Strand 5	B	253	259	anti-parallel
Strand 6	B	223	226	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	300	first strand
Strand 2	B	343	346	anti-parallel
Strand 3	B	354	357	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	374	first strand
Strand 2	B	403	405	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	170	first strand
Strand 2	C	174	181	anti-parallel
Strand 3	C	193	198	anti-parallel
Strand 4	C	289	295	anti-parallel
Strand 5	C	253	259	anti-parallel
Strand 6	C	221	226	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	299	300	first strand
Strand 2	C	343	346	anti-parallel
Strand 3	C	354	357	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	374	first strand
Strand 2	C	403	405	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	170	first strand
Strand 2	D	174	181	anti-parallel
Strand 3	D	193	198	anti-parallel
Strand 4	D	289	295	anti-parallel
Strand 5	D	253	259	anti-parallel
Strand 6	D	223	226	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	299	300	first strand
Strand 2	D	343	346	anti-parallel
Strand 3	D	354	357	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	374	first strand
Strand 2	D	403	405	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	170	first strand
Strand 2	E	174	181	anti-parallel
Strand 3	E	193	198	anti-parallel
Strand 4	E	289	295	anti-parallel
Strand 5	E	253	259	anti-parallel
Strand 6	E	221	225	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	299	300	first strand
Strand 2	E	343	346	anti-parallel
Strand 3	E	354	357	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	372	374	first strand
Strand 2	E	403	405	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	170	first strand
Strand 2	F	174	181	anti-parallel
Strand 3	F	193	199	anti-parallel
Strand 4	F	289	295	anti-parallel
Strand 5	F	253	259	anti-parallel
Strand 6	F	223	226	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	299	300	first strand
Strand 2	F	343	346	anti-parallel
Strand 3	F	354	357	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	372	374	first strand
Strand 2	F	403	405	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OAT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OAT