Analysis of interatomic Contacts of Structural Units in PDB entry:
5OBT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OBT entry

There are 8 chains in PDB entry 5OBT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 54SER 175
A
 HIS 177MET 281
E
 LEU 284ALA 333
C
 TYR 2ASP 5
B
 PHE 54SER 175
B
 HIS 177ASN 283
F
 LEU 284ALA 333
D
 TYR 2ASP 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5OBT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 71Right-handed 310
Helix 2
AA2
A
72 89Right-handed alpha
Helix 3
AA3
A
92 94Right-handed 310
Helix 4
AA4
A
134 138Right-handed 310
Helix 5
AA5
A
139 149Right-handed alpha
Helix 6
AA6
A
150 154Right-handed 310
Helix 7
AA7
A
193 207Right-handed alpha
Helix 8
AA8
A
220 225Right-handed 310
Helix 9
AA9
A
270 281Right-handed alpha
Helix 10
AB1
E
288 301Right-handed alpha
Helix 11
AB2
E
317 323Right-handed 310
Helix 12
AB3
E
324 329Right-handed alpha
Helix 13
AB4
B
69 71Right-handed 310
Helix 14
AB5
B
72 89Right-handed alpha
Helix 15
AB6
B
92 94Right-handed 310
Helix 16
AB7
B
134 138Right-handed 310
Helix 17
AB8
B
139 149Right-handed alpha
Helix 18
AB9
B
150 154Right-handed 310
Helix 19
AC1
B
193 207Right-handed alpha
Helix 20
AC2
B
221 226Right-handed alpha
Helix 21
AC3
B
270 279Right-handed alpha
Helix 22
AC4
F
288 301Right-handed alpha
Helix 23
AC5
F
317 323Right-handed 310
Helix 24
AC6
F
324 329Right-handed alpha
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There are 6 sheets in PDB entry 5OBT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
59 65parallel
Strand 3
A
169 175parallel
Strand 4
A
211 216parallel
Strand 5
A
235 239parallel
Strand 6
E
312 315anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
182 183anti-parallel
Strand 3
A
191 192anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
268 269anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
59 65parallel
Strand 3
B
169 175parallel
Strand 4
B
211 216parallel
Strand 5
B
235 239parallel
Strand 6
F
312 315anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
182 183anti-parallel
Strand 3
B
191 192anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 250first strand
Strand 2
B
268 269anti-parallel
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