Analysis of interatomic Contacts of Structural Units in PDB entry:
5OBV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OBV entry

There is 1 chain in PDB entry 5OBV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5HIS 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 5OBV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 59Right-handed alpha
Helix 2
AA2
A
71 75Right-handed 310
Helix 3
AA3
A
94 115Right-handed alpha
Helix 4
AA4
A
130 144Right-handed alpha
Helix 5
AA5
A
154 162Right-handed alpha
Helix 6
AA6
A
163 167Right-handed 310
Helix 7
AA7
A
207 227Right-handed alpha
Helix 8
AA8
A
235 253Right-handed alpha
Helix 9
AA9
A
282 295Right-handed alpha
Helix 10
AB1
A
296 307Right-handed alpha
Helix 11
AB2
A
310 314Right-handed 310
Helix 12
AB3
A
321 325Right-handed 310
Helix 13
AB4
A
326 337Right-handed alpha
Helix 14
AB5
A
350 365Right-handed alpha
Helix 15
AB6
A
385 387Right-handed 310
Helix 16
AB7
A
489 503Right-handed alpha
Helix 17
AB8
A
503 514Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 5OBV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
17 24anti-parallel
Strand 3
A
40 41anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
17 24anti-parallel
Strand 3
A
9 12anti-parallel
Strand 4
A
120 125parallel
Strand 5
A
147 153parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
43 47anti-parallel
Strand 3
A
68 69anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
90 93anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 203first strand
Strand 2
A
183 191anti-parallel
Strand 3
A
171 178anti-parallel
Strand 4
A
316 320parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 269first strand
Strand 2
A
272 281anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 393first strand
Strand 2
A
380 384anti-parallel
Strand 3
A
421 423anti-parallel
Strand 4
A
433 436anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 471first strand
Strand 2
A
453 459anti-parallel
Strand 3
A
465 468anti-parallel
Strand 4
A
479 482anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 471first strand
Strand 2
A
453 459anti-parallel
Strand 3
A
401 409anti-parallel
Strand 4
A
521 522parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 418first strand
Strand 2
A
439 440anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il