Analysis of interatomic Contacts of Structural Units in PDB entry:
5OBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OBY entry

There is 1 chain in PDB entry 5OBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4GLU 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5OBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 59Right-handed alpha
Helix 2
AA2
A
70 75Right-handed 310
Helix 3
AA3
A
94 115Right-handed alpha
Helix 4
AA4
A
130 144Right-handed alpha
Helix 5
AA5
A
154 162Right-handed alpha
Helix 6
AA6
A
163 167Right-handed 310
Helix 7
AA7
A
207 227Right-handed alpha
Helix 8
AA8
A
231 234Right-handed 310
Helix 9
AA9
A
235 256Right-handed alpha
Helix 10
AB1
A
282 289Right-handed alpha
Helix 11
AB2
A
289 296Right-handed alpha
Helix 12
AB3
A
296 308Right-handed alpha
Helix 13
AB4
A
310 314Right-handed 310
Helix 14
AB5
A
321 325Right-handed 310
Helix 15
AB6
A
326 337Right-handed alpha
Helix 16
AB7
A
350 365Right-handed alpha
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There are 6 sheets in PDB entry 5OBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
17 24anti-parallel
Strand 3
A
40 41anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
17 24anti-parallel
Strand 3
A
9 13anti-parallel
Strand 4
A
120 125parallel
Strand 5
A
147 153parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
44 47anti-parallel
Strand 3
A
67 68anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
90 93anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 203first strand
Strand 2
A
183 191anti-parallel
Strand 3
A
171 178anti-parallel
Strand 4
A
316 320parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 269first strand
Strand 2
A
272 281anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il