Analysis of interatomic Contacts of Structural Units in PDB entry:
5OBZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OBZ entry

There are 2 chains in PDB entry 5OBZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 19GLY 277
B
 PHE 380PRO 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5OBZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 40Right-handed alpha
Helix 2
AA2
A
44 63Right-handed alpha
Helix 3
AA3
A
112 129Right-handed alpha
Helix 4
AA4
A
131 136Right-handed alpha
Helix 5
AA5
A
141 161Right-handed alpha
Helix 6
AA6
A
216 230Right-handed alpha
Helix 7
AA7
A
243 253Right-handed alpha
Helix 8
AA8
A
262 264Right-handed 310
Helix 9
AA9
A
265 274Right-handed alpha
Helix 10
AB1
B
389 393Right-handed 310
Helix 11
AB2
B
484 494Right-handed alpha
Helix 12
AB3
B
498 503Right-handed alpha
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There are 3 sheets in PDB entry 5OBZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
66 73anti-parallel
Strand 3
A
23 30parallel
Strand 4
A
201 208parallel
Strand 5
A
233 238parallel
Strand 6
A
257 259parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
211 212parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
474 475first strand
Strand 2
B
482 483anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il