Analysis of interatomic Contacts of Structural Units in PDB entry:
5OC1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OC1 entry

There is 1 chain in PDB entry 5OC1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2GLN 566
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5OC1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 22Right-handed alpha
Helix 2
AA2
A
41 45Right-handed 310
Helix 3
AA3
A
46 53Right-handed 310
Helix 4
AA4
A
68 72Right-handed 310
Helix 5
AA5
A
85 90Right-handed 310
Helix 6
AA6
A
99 111Right-handed alpha
Helix 7
AA7
A
116 127Right-handed alpha
Helix 8
AA8
A
144 148Right-handed 310
Helix 9
AA9
A
164 176Right-handed alpha
Helix 10
AB1
A
185 189Right-handed 310
Helix 11
AB2
A
208 213Right-handed alpha
Helix 12
AB3
A
214 218Right-handed 310
Helix 13
AB4
A
272 284Right-handed alpha
Helix 14
AB5
A
288 294Right-handed alpha
Helix 15
AB6
A
328 333Right-handed 310
Helix 16
AB7
A
334 349Right-handed alpha
Helix 17
AB8
A
351 355Right-handed 310
Helix 18
AB9
A
370 374Right-handed 310
Helix 19
AC1
A
445 464Right-handed alpha
Helix 20
AC2
A
465 469Right-handed 310
Helix 21
AC3
A
477 481Right-handed 310
Helix 22
AC4
A
485 497Right-handed alpha
Helix 23
AC5
A
535 539Right-handed 310
Helix 24
AC6
A
547 565Right-handed alpha
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There are 9 sheets in PDB entry 5OC1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 226first strand
Strand 2
A
29 32parallel
Strand 3
A
3 8parallel
Strand 4
A
260 270parallel
Strand 5
A
248 252anti-parallel
Strand 6
A
230 235anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 226first strand
Strand 2
A
29 32parallel
Strand 3
A
3 8parallel
Strand 4
A
260 270parallel
Strand 5
A
531 533parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
154 156parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
360 364anti-parallel
Strand 3
A
388 393anti-parallel
Strand 4
A
409 416anti-parallel
Strand 5
A
319 322anti-parallel
Strand 6
A
472 475anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
360 364anti-parallel
Strand 3
A
388 393anti-parallel
Strand 4
A
409 416anti-parallel
Strand 5
A
314 316anti-parallel
Strand 6
A
498 499anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
205 206anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
243 244anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 287first strand
Strand 2
A
301 302parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 310first strand
Strand 2
A
423 426anti-parallel
Strand 3
A
437 439anti-parallel
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