Analysis of interatomic Contacts of Structural Units in PDB entry:
5OC7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OC7 entry

There are 4 chains in PDB entry 5OC7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ARG 707CYS 886
A
 ARG 707CYS 886
C
 GLY 1THR 92
B
 SER 4THR 92
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5OC7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
850 866Right-handed alpha
Helix 2
AA2
D
875 886Right-handed alpha
Helix 3
AA3
A
850 866Right-handed alpha
Helix 4
AA4
A
875 886Right-handed alpha
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There are 8 sheets in PDB entry 5OC7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
752 758first strand
Strand 2
D
734 739anti-parallel
Strand 3
D
722 731anti-parallel
Strand 4
D
709 719anti-parallel
Strand 5
D
843 847anti-parallel
Strand 6
D
833 838anti-parallel
Strand 7
D
762 767anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
752 758first strand
Strand 2
A
734 739anti-parallel
Strand 3
A
722 731anti-parallel
Strand 4
A
709 719anti-parallel
Strand 5
A
843 847anti-parallel
Strand 6
A
833 838anti-parallel
Strand 7
A
762 767anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 16first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
58 61anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 53first strand
Strand 2
C
33 40anti-parallel
Strand 3
C
69 78anti-parallel
Strand 4
C
81 82anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 53first strand
Strand 2
C
33 40anti-parallel
Strand 3
C
69 78anti-parallel
Strand 4
C
86 91anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 15first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
58 62anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 53first strand
Strand 2
B
33 40anti-parallel
Strand 3
B
69 78anti-parallel
Strand 4
B
81 82anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 53first strand
Strand 2
B
33 40anti-parallel
Strand 3
B
69 78anti-parallel
Strand 4
B
86 91anti-parallel
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