Analysis of interatomic Contacts of Structural Units in PDB entry:
5OC9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OC9 entry

There are 2 chains in PDB entry 5OC9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 14GLN 639
B
 SER 14GLN 639
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5OC9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 41Right-handed alpha
Helix 2
AA2
A
42 46Right-handed 310
Helix 3
AA3
A
75 87Right-handed alpha
Helix 4
AA4
A
104 108Right-handed 310
Helix 5
AA5
A
120 134Right-handed alpha
Helix 6
AA6
A
156 164Right-handed alpha
Helix 7
AA7
A
175 187Right-handed alpha
Helix 8
AA8
A
196 205Right-handed alpha
Helix 9
AA9
A
205 235Right-handed alpha
Helix 10
AB1
A
239 273Right-handed alpha
Helix 11
AB2
A
278 282Right-handed 310
Helix 12
AB3
A
306 317Right-handed alpha
Helix 13
AB4
A
317 349Right-handed alpha
Helix 14
AB5
A
354 359Right-handed alpha
Helix 15
AB6
A
360 388Right-handed alpha
Helix 16
AB7
A
392 422Right-handed alpha
Helix 17
AB8
A
425 438Right-handed alpha
Helix 18
AB9
A
438 449Right-handed alpha
Helix 19
AC1
A
449 469Right-handed alpha
Helix 20
AC2
A
476 488Right-handed alpha
Helix 21
AC3
A
494 512Right-handed alpha
Helix 22
AC4
A
517 540Right-handed alpha
Helix 23
AC5
A
554 577Right-handed alpha
Helix 24
AC6
A
577 582Right-handed alpha
Helix 25
AC7
A
587 613Right-handed alpha
Helix 26
AC8
A
617 639Right-handed alpha
Helix 27
AC9
B
28 41Right-handed alpha
Helix 28
AD1
B
42 46Right-handed 310
Helix 29
AD2
B
59 63Right-handed 310
Helix 30
AD3
B
75 87Right-handed alpha
Helix 31
AD4
B
104 108Right-handed 310
Helix 32
AD5
B
120 134Right-handed alpha
Helix 33
AD6
B
156 165Right-handed alpha
Helix 34
AD7
B
175 187Right-handed alpha
Helix 35
AD8
B
196 205Right-handed alpha
Helix 36
AD9
B
205 235Right-handed alpha
Helix 37
AE1
B
239 273Right-handed alpha
Helix 38
AE2
B
278 282Right-handed 310
Helix 39
AE3
B
306 317Right-handed alpha
Helix 40
AE4
B
317 347Right-handed alpha
Helix 41
AE5
B
355 359Right-handed alpha
Helix 42
AE6
B
360 388Right-handed alpha
Helix 43
AE7
B
392 422Right-handed alpha
Helix 44
AE8
B
425 438Right-handed alpha
Helix 45
AE9
B
438 449Right-handed alpha
Helix 46
AF1
B
449 471Right-handed alpha
Helix 47
AF2
B
476 488Right-handed alpha
Helix 48
AF3
B
494 512Right-handed alpha
Helix 49
AF4
B
517 540Right-handed alpha
Helix 50
AF5
B
554 577Right-handed alpha
Helix 51
AF6
B
577 582Right-handed alpha
Helix 52
AF7
B
587 613Right-handed alpha
Helix 53
AF8
B
617 639Right-handed alpha
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There are 8 sheets in PDB entry 5OC9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
69 73anti-parallel
Strand 3
A
19 23anti-parallel
Strand 4
A
167 172anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
97 99anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
146 150anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 294first strand
Strand 2
A
301 304anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
69 73anti-parallel
Strand 3
B
19 23anti-parallel
Strand 4
B
167 172anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 91first strand
Strand 2
B
97 99anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 143first strand
Strand 2
B
146 150anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 294first strand
Strand 2
B
301 304anti-parallel
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