Analysis of interatomic Contacts of Structural Units in PDB entry:
5OCH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OCH entry

There are 7 chains in PDB entry 5OCH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 132	PRO 482
A	ARG 484	LEU 718
B	PHE 132	GLY 460
B	CYS 462	PRO 482
B	ARG 484	LEU 718
C	PHE 132	PRO 482
C	ARG 484	GLU 488

There are177 helices in PDB entry 5OCH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	136	142	Right-handed alpha
Helix 2	AA2	A	144	172	Right-handed alpha
Helix 3	AA3	A	190	238	Right-handed alpha
Helix 4	AA4	A	239	246	Right-handed alpha
Helix 5	AA5	A	247	280	Right-handed alpha
Helix 6	AA6	A	291	310	Right-handed alpha
Helix 7	AA7	A	315	340	Right-handed alpha
Helix 8	AA8	A	340	347	Right-handed alpha
Helix 9	AA9	A	349	396	Right-handed alpha
Helix 10	AB1	A	408	431	Right-handed alpha
Helix 11	AB2	A	431	450	Right-handed alpha
Helix 12	AB3	A	512	521	Right-handed alpha
Helix 13	AB4	A	542	550	Right-handed alpha
Helix 14	AB5	A	564	570	Right-handed alpha
Helix 15	AB6	A	577	588	Right-handed alpha
Helix 16	AB7	A	590	595	Right-handed alpha
Helix 17	AB8	A	599	603	Right-handed 310
Helix 18	AB9	A	613	627	Right-handed alpha
Helix 19	AC1	A	643	658	Right-handed alpha
Helix 20	AC2	A	672	676	Right-handed 310
Helix 21	AC3	A	692	699	Right-handed alpha
Helix 22	AC4	A	701	718	Right-handed alpha
Helix 23	AC5	B	136	142	Right-handed alpha
Helix 24	AC6	B	144	173	Right-handed alpha
Helix 25	AC7	B	189	238	Right-handed alpha
Helix 26	AC8	B	239	246	Right-handed alpha
Helix 27	AC9	B	247	288	Right-handed alpha
Helix 28	AD1	B	289	313	Right-handed alpha
Helix 29	AD2	B	315	340	Right-handed alpha
Helix 30	AD3	B	340	347	Right-handed alpha
Helix 31	AD4	B	349	402	Right-handed alpha
Helix 32	AD5	B	407	431	Right-handed alpha
Helix 33	AD6	B	431	450	Right-handed alpha
Helix 34	AD7	B	512	521	Right-handed alpha
Helix 35	AD8	B	542	550	Right-handed alpha
Helix 36	AD9	B	564	570	Right-handed alpha
Helix 37	AE1	B	577	588	Right-handed alpha
Helix 38	AE2	B	590	595	Right-handed alpha
Helix 39	AE3	B	599	603	Right-handed 310
Helix 40	AE4	B	613	627	Right-handed alpha
Helix 41	AE5	B	643	658	Right-handed alpha
Helix 42	AE6	B	672	676	Right-handed 310
Helix 43	AE7	B	692	700	Right-handed alpha
Helix 44	AE8	B	701	718	Right-handed alpha
Helix 45	AE9	C	136	142	Right-handed alpha
Helix 46	AF1	C	144	164	Right-handed alpha
Helix 47	AF2	C	164	173	Right-handed alpha
Helix 48	AF3	C	190	238	Right-handed alpha
Helix 49	AF4	C	239	246	Right-handed alpha
Helix 50	AF5	C	247	277	Right-handed alpha
Helix 51	AF6	C	293	300	Right-handed alpha
Helix 52	AF7	C	315	340	Right-handed alpha
Helix 53	AF8	C	340	347	Right-handed alpha
Helix 54	AF9	C	349	397	Right-handed alpha
Helix 55	AG1	C	411	431	Right-handed alpha
Helix 56	AG2	C	431	448	Right-handed alpha
Helix 57	AG3	C	512	521	Right-handed alpha
Helix 58	AG4	C	542	550	Right-handed alpha
Helix 59	AG5	C	564	570	Right-handed alpha
Helix 60	AG6	C	577	588	Right-handed alpha
Helix 61	AG7	C	590	595	Right-handed alpha
Helix 62	AG8	C	599	603	Right-handed 310
Helix 63	AG9	C	613	627	Right-handed alpha
Helix 64	AH1	C	643	658	Right-handed alpha
Helix 65	AH2	C	672	676	Right-handed 310
Helix 66	AH3	C	692	700	Right-handed alpha
Helix 67	AH4	C	701	718	Right-handed alpha
Helix 68	AH5	D	137	142	Right-handed alpha
Helix 69	AH6	D	144	178	Right-handed alpha
Helix 70	AH7	D	189	237	Right-handed alpha
Helix 71	AH8	D	239	246	Right-handed alpha
Helix 72	AH9	D	247	288	Right-handed alpha
Helix 73	AI1	D	289	313	Right-handed alpha
Helix 74	AI2	D	315	340	Right-handed alpha
Helix 75	AI3	D	340	347	Right-handed alpha
Helix 76	AI4	D	349	402	Right-handed alpha
Helix 77	AI5	D	407	431	Right-handed alpha
Helix 78	AI6	D	431	450	Right-handed alpha
Helix 79	AI7	D	512	521	Right-handed alpha
Helix 80	AI8	D	542	550	Right-handed alpha
Helix 81	AI9	D	564	570	Right-handed alpha
Helix 82	AJ1	D	577	588	Right-handed alpha
Helix 83	AJ2	D	590	595	Right-handed alpha
Helix 84	AJ3	D	599	603	Right-handed 310
Helix 85	AJ4	D	613	627	Right-handed alpha
Helix 86	AJ5	D	643	658	Right-handed alpha
Helix 87	AJ6	D	672	676	Right-handed 310
Helix 88	AJ7	D	692	700	Right-handed alpha
Helix 89	AJ8	D	701	713	Right-handed alpha
Helix 90	AJ9	E	136	142	Right-handed alpha
Helix 91	AK1	E	144	178	Right-handed alpha
Helix 92	AK2	E	189	238	Right-handed alpha
Helix 93	AK3	E	239	246	Right-handed alpha
Helix 94	AK4	E	247	288	Right-handed alpha
Helix 95	AK5	E	291	313	Right-handed alpha
Helix 96	AK6	E	315	340	Right-handed alpha
Helix 97	AK7	E	340	347	Right-handed alpha
Helix 98	AK8	E	349	403	Right-handed alpha
Helix 99	AK9	E	407	431	Right-handed alpha
Helix 100	AL1	E	431	450	Right-handed alpha
Helix 101	AL2	E	512	521	Right-handed alpha
Helix 102	AL3	E	542	549	Right-handed alpha
Helix 103	AL4	E	564	570	Right-handed alpha
Helix 104	AL5	E	577	588	Right-handed alpha
Helix 105	AL6	E	590	595	Right-handed alpha
Helix 106	AL7	E	599	603	Right-handed 310
Helix 107	AL8	E	613	627	Right-handed alpha
Helix 108	AL9	E	643	658	Right-handed alpha
Helix 109	AM1	E	672	676	Right-handed 310
Helix 110	AM2	E	692	700	Right-handed alpha
Helix 111	AM3	E	701	716	Right-handed alpha
Helix 112	AM4	F	136	142	Right-handed alpha
Helix 113	AM5	F	144	178	Right-handed alpha
Helix 114	AM6	F	188	238	Right-handed alpha
Helix 115	AM7	F	239	246	Right-handed alpha
Helix 116	AM8	F	247	288	Right-handed alpha
Helix 117	AM9	F	289	313	Right-handed alpha
Helix 118	AN1	F	315	340	Right-handed alpha
Helix 119	AN2	F	340	347	Right-handed alpha
Helix 120	AN3	F	349	403	Right-handed alpha
Helix 121	AN4	F	407	431	Right-handed alpha
Helix 122	AN5	F	431	450	Right-handed alpha
Helix 123	AN6	F	512	521	Right-handed alpha
Helix 124	AN7	F	542	550	Right-handed alpha
Helix 125	AN8	F	564	570	Right-handed alpha
Helix 126	AN9	F	577	588	Right-handed alpha
Helix 127	AO1	F	590	595	Right-handed alpha
Helix 128	AO2	F	599	603	Right-handed 310
Helix 129	AO3	F	613	627	Right-handed alpha
Helix 130	AO4	F	643	658	Right-handed alpha
Helix 131	AO5	F	672	676	Right-handed 310
Helix 132	AO6	F	692	700	Right-handed alpha
Helix 133	AO7	F	701	712	Right-handed alpha
Helix 134	AO8	G	136	142	Right-handed alpha
Helix 135	AO9	G	144	169	Right-handed alpha
Helix 136	AP1	G	189	238	Right-handed alpha
Helix 137	AP2	G	239	246	Right-handed alpha
Helix 138	AP3	G	247	285	Right-handed alpha
Helix 139	AP4	G	294	313	Right-handed alpha
Helix 140	AP5	G	315	340	Right-handed alpha
Helix 141	AP6	G	340	347	Right-handed alpha
Helix 142	AP7	G	349	397	Right-handed alpha
Helix 143	AP8	G	408	431	Right-handed alpha
Helix 144	AP9	G	431	450	Right-handed alpha
Helix 145	AQ1	G	512	521	Right-handed alpha
Helix 146	AQ2	G	542	550	Right-handed alpha
Helix 147	AQ3	G	564	570	Right-handed alpha
Helix 148	AQ4	G	577	588	Right-handed alpha
Helix 149	AQ5	G	590	595	Right-handed alpha
Helix 150	AQ6	G	599	603	Right-handed 310
Helix 151	AQ7	G	613	627	Right-handed alpha
Helix 152	AQ8	G	643	658	Right-handed alpha
Helix 153	AQ9	G	672	676	Right-handed 310
Helix 154	AR1	G	694	699	Right-handed alpha
Helix 155	AR2	G	701	717	Right-handed alpha
Helix 156	AR3	H	136	142	Right-handed alpha
Helix 157	AR4	H	144	172	Right-handed alpha
Helix 158	AR5	H	191	238	Right-handed alpha
Helix 159	AR6	H	239	246	Right-handed alpha
Helix 160	AR7	H	247	284	Right-handed alpha
Helix 161	AR8	H	291	310	Right-handed alpha
Helix 162	AR9	H	316	340	Right-handed alpha
Helix 163	AS1	H	340	347	Right-handed alpha
Helix 164	AS2	H	349	397	Right-handed alpha
Helix 165	AS3	H	408	431	Right-handed alpha
Helix 166	AS4	H	431	451	Right-handed alpha
Helix 167	AS5	H	512	521	Right-handed alpha
Helix 168	AS6	H	542	548	Right-handed alpha
Helix 169	AS7	H	564	570	Right-handed alpha
Helix 170	AS8	H	577	588	Right-handed alpha
Helix 171	AS9	H	590	595	Right-handed alpha
Helix 172	AT1	H	599	603	Right-handed 310
Helix 173	AT2	H	613	627	Right-handed alpha
Helix 174	AT3	H	643	658	Right-handed alpha
Helix 175	AT4	H	672	676	Right-handed 310
Helix 176	AT5	H	692	698	Right-handed alpha
Helix 177	AT6	H	703	713	Right-handed alpha

There are 16 sheets in PDB entry 5OCH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	497	first strand
Strand 2	A	472	480	anti-parallel
Strand 3	A	528	533	anti-parallel
Strand 4	A	536	537	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	551	554	first strand
Strand 2	A	632	636	parallel
Strand 3	A	662	666	parallel
Strand 4	A	502	507	parallel
Strand 5	A	679	683	parallel
Strand 6	A	686	691	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	497	first strand
Strand 2	B	472	480	anti-parallel
Strand 3	B	528	533	anti-parallel
Strand 4	B	536	537	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	551	554	first strand
Strand 2	B	632	636	parallel
Strand 3	B	662	666	parallel
Strand 4	B	502	507	parallel
Strand 5	B	678	683	parallel
Strand 6	B	686	691	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	497	first strand
Strand 2	C	472	479	anti-parallel
Strand 3	C	528	533	anti-parallel
Strand 4	C	536	537	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	551	554	first strand
Strand 2	C	632	636	parallel
Strand 3	C	662	666	parallel
Strand 4	C	502	507	parallel
Strand 5	C	678	683	parallel
Strand 6	C	686	691	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	490	497	first strand
Strand 2	D	472	479	anti-parallel
Strand 3	D	528	533	anti-parallel
Strand 4	D	536	537	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	551	554	first strand
Strand 2	D	632	636	parallel
Strand 3	D	662	666	parallel
Strand 4	D	502	507	parallel
Strand 5	D	678	683	parallel
Strand 6	D	686	691	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	490	497	first strand
Strand 2	E	472	479	anti-parallel
Strand 3	E	528	533	anti-parallel
Strand 4	E	536	537	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	551	554	first strand
Strand 2	E	632	636	parallel
Strand 3	E	662	666	parallel
Strand 4	E	502	507	parallel
Strand 5	E	678	683	parallel
Strand 6	E	686	691	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	488	497	first strand
Strand 2	F	472	480	anti-parallel
Strand 3	F	528	533	anti-parallel
Strand 4	F	536	537	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	551	554	first strand
Strand 2	F	632	636	parallel
Strand 3	F	662	666	parallel
Strand 4	F	502	507	parallel
Strand 5	F	678	683	parallel
Strand 6	F	686	691	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	490	497	first strand
Strand 2	G	472	479	anti-parallel
Strand 3	G	528	533	anti-parallel
Strand 4	G	536	537	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	551	554	first strand
Strand 2	G	632	636	parallel
Strand 3	G	662	666	parallel
Strand 4	G	502	507	parallel
Strand 5	G	678	683	parallel
Strand 6	G	686	691	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	490	497	first strand
Strand 2	H	472	479	anti-parallel
Strand 3	H	528	533	anti-parallel
Strand 4	H	536	537	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	551	554	first strand
Strand 2	H	632	636	parallel
Strand 3	H	662	666	parallel
Strand 4	H	502	507	parallel
Strand 5	H	678	683	parallel
Strand 6	H	686	691	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OCH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OCH