Analysis of interatomic Contacts of Structural Units in PDB entry:
5OCJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OCJ entry

There are 2 chains in PDB entry 5OCJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8GLY 282
B
 LEU 6GLY 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5OCJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 53Right-handed alpha
Helix 2
AA2
A
54 60Right-handed alpha
Helix 3
AA3
A
94 101Right-handed alpha
Helix 4
AA4
A
101 112Right-handed alpha
Helix 5
AA5
A
124 137Right-handed alpha
Helix 6
AA6
A
157 169Right-handed alpha
Helix 7
AA7
A
173 179Right-handed alpha
Helix 8
AA8
A
184 189Right-handed alpha
Helix 9
AA9
A
194 201Right-handed alpha
Helix 10
AB1
A
221 245Right-handed alpha
Helix 11
AB2
A
261 272Right-handed alpha
Helix 12
AB3
A
272 282Right-handed alpha
Helix 13
AB4
B
47 53Right-handed alpha
Helix 14
AB5
B
54 60Right-handed alpha
Helix 15
AB6
B
94 101Right-handed alpha
Helix 16
AB7
B
101 112Right-handed alpha
Helix 17
AB8
B
124 137Right-handed alpha
Helix 18
AB9
B
157 169Right-handed alpha
Helix 19
AC1
B
173 179Right-handed alpha
Helix 20
AC2
B
183 189Right-handed alpha
Helix 21
AC3
B
194 202Right-handed alpha
Helix 22
AC4
B
221 245Right-handed alpha
Helix 23
AC5
B
261 272Right-handed alpha
Helix 24
AC6
B
272 282Right-handed alpha
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There are 2 sheets in PDB entry 5OCJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 15first strand
Strand 2
A
20 27anti-parallel
Strand 3
A
65 69anti-parallel
Strand 4
A
33 36parallel
Strand 5
A
119 123parallel
Strand 6
A
143 147parallel
Strand 7
A
204 208parallel
Strand 8
A
250 253parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 15first strand
Strand 2
B
20 27anti-parallel
Strand 3
B
65 69anti-parallel
Strand 4
B
33 36parallel
Strand 5
B
119 123parallel
Strand 6
B
143 147parallel
Strand 7
B
204 208parallel
Strand 8
B
250 253parallel
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