Analysis of interatomic Contacts of Structural Units in PDB entry:
5OCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OCM entry

There are 6 chains in PDB entry 5OCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2ALA 291
B
 MET 1SER 290
C
 ARG 2PRO 289
D
 MET 1SER 290
E
 ARG 2ARG 287
F
 ASP 3SER 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 5OCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
39 45Right-handed alpha
Helix 3
AA3
A
52 59Right-handed alpha
Helix 4
AA4
A
69 78Right-handed alpha
Helix 5
AA5
A
79 81Right-handed 310
Helix 6
AA6
A
96 110Right-handed alpha
Helix 7
AA7
A
138 150Right-handed alpha
Helix 8
AA8
A
164 193Right-handed alpha
Helix 9
AA9
A
197 226Right-handed alpha
Helix 10
AB1
A
234 253Right-handed alpha
Helix 11
AB2
A
256 272Right-handed alpha
Helix 12
AB3
A
278 281Right-handed 310
Helix 13
AB4
A
282 287Right-handed alpha
Helix 14
AB5
B
12 25Right-handed alpha
Helix 15
AB6
B
39 45Right-handed alpha
Helix 16
AB7
B
52 59Right-handed alpha
Helix 17
AB8
B
69 78Right-handed alpha
Helix 18
AB9
B
79 81Right-handed 310
Helix 19
AC1
B
96 110Right-handed alpha
Helix 20
AC2
B
138 150Right-handed alpha
Helix 21
AC3
B
151 153Right-handed 310
Helix 22
AC4
B
164 193Right-handed alpha
Helix 23
AC5
B
197 226Right-handed alpha
Helix 24
AC6
B
234 253Right-handed alpha
Helix 25
AC7
B
256 272Right-handed alpha
Helix 26
AC8
B
278 281Right-handed 310
Helix 27
AC9
B
282 287Right-handed alpha
Helix 28
AD1
C
12 25Right-handed alpha
Helix 29
AD2
C
39 45Right-handed alpha
Helix 30
AD3
C
52 59Right-handed alpha
Helix 31
AD4
C
69 78Right-handed alpha
Helix 32
AD5
C
79 81Right-handed 310
Helix 33
AD6
C
96 110Right-handed alpha
Helix 34
AD7
C
138 150Right-handed alpha
Helix 35
AD8
C
151 153Right-handed 310
Helix 36
AD9
C
164 193Right-handed alpha
Helix 37
AE1
C
197 226Right-handed alpha
Helix 38
AE2
C
234 253Right-handed alpha
Helix 39
AE3
C
256 272Right-handed alpha
Helix 40
AE4
C
278 281Right-handed 310
Helix 41
AE5
C
282 287Right-handed alpha
Helix 42
AE6
D
12 25Right-handed alpha
Helix 43
AE7
D
39 45Right-handed alpha
Helix 44
AE8
D
52 59Right-handed alpha
Helix 45
AE9
D
69 78Right-handed alpha
Helix 46
AF1
D
79 81Right-handed 310
Helix 47
AF2
D
96 110Right-handed alpha
Helix 48
AF3
D
138 150Right-handed alpha
Helix 49
AF4
D
164 193Right-handed alpha
Helix 50
AF5
D
197 226Right-handed alpha
Helix 51
AF6
D
234 253Right-handed alpha
Helix 52
AF7
D
256 272Right-handed alpha
Helix 53
AF8
D
278 281Right-handed 310
Helix 54
AF9
D
282 287Right-handed alpha
Helix 55
AG1
E
12 25Right-handed alpha
Helix 56
AG2
E
39 45Right-handed alpha
Helix 57
AG3
E
52 59Right-handed alpha
Helix 58
AG4
E
69 78Right-handed alpha
Helix 59
AG5
E
79 81Right-handed 310
Helix 60
AG6
E
96 110Right-handed alpha
Helix 61
AG7
E
138 150Right-handed alpha
Helix 62
AG8
E
164 193Right-handed alpha
Helix 63
AG9
E
197 226Right-handed alpha
Helix 64
AH1
E
234 253Right-handed alpha
Helix 65
AH2
E
256 272Right-handed alpha
Helix 66
AH3
E
278 281Right-handed 310
Helix 67
AH4
E
282 287Right-handed alpha
Helix 68
AH5
F
12 25Right-handed alpha
Helix 69
AH6
F
39 46Right-handed alpha
Helix 70
AH7
F
52 60Right-handed alpha
Helix 71
AH8
F
69 78Right-handed alpha
Helix 72
AH9
F
79 81Right-handed 310
Helix 73
AI1
F
96 110Right-handed alpha
Helix 74
AI2
F
138 150Right-handed alpha
Helix 75
AI3
F
151 153Right-handed 310
Helix 76
AI4
F
164 193Right-handed alpha
Helix 77
AI5
F
197 226Right-handed alpha
Helix 78
AI6
F
234 253Right-handed alpha
Helix 79
AI7
F
256 272Right-handed alpha
Helix 80
AI8
F
278 281Right-handed 310
Helix 81
AI9
F
282 287Right-handed alpha
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There are 6 sheets in PDB entry 5OCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
29 32parallel
Strand 3
A
6 9parallel
Strand 4
A
62 65parallel
Strand 5
A
88 91parallel
Strand 6
A
113 120parallel
Strand 7
A
128 136anti-parallel
Strand 8
A
153 160parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
29 32parallel
Strand 3
B
6 9parallel
Strand 4
B
62 65parallel
Strand 5
B
88 91parallel
Strand 6
B
113 120parallel
Strand 7
B
132 136anti-parallel
Strand 8
B
155 160parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 49first strand
Strand 2
C
29 32parallel
Strand 3
C
6 9parallel
Strand 4
C
62 65parallel
Strand 5
C
88 91parallel
Strand 6
C
113 120parallel
Strand 7
C
132 136anti-parallel
Strand 8
C
155 160parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 49first strand
Strand 2
D
29 32parallel
Strand 3
D
6 9parallel
Strand 4
D
62 65parallel
Strand 5
D
88 91parallel
Strand 6
D
113 120parallel
Strand 7
D
128 136anti-parallel
Strand 8
D
153 160parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
48 49first strand
Strand 2
E
29 32parallel
Strand 3
E
6 9parallel
Strand 4
E
62 65parallel
Strand 5
E
88 91parallel
Strand 6
E
113 120parallel
Strand 7
E
128 136anti-parallel
Strand 8
E
153 160parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
48 49first strand
Strand 2
F
29 32parallel
Strand 3
F
6 9parallel
Strand 4
F
62 65parallel
Strand 5
F
88 91parallel
Strand 6
F
113 120parallel
Strand 7
F
132 136anti-parallel
Strand 8
F
155 160parallel
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