Analysis of interatomic Contacts of Structural Units in PDB entry:
5OCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OCP entry

There are 2 chains in PDB entry 5OCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1HIS 302
B
 THR 1HIS 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5OCP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 30Right-handed alpha
Helix 2
AA2
A
41 55Right-handed alpha
Helix 3
AA3
A
70 80Right-handed alpha
Helix 4
AA4
A
95 99Right-handed 310
Helix 5
AA5
A
106 122Right-handed alpha
Helix 6
AA6
A
137 152Right-handed alpha
Helix 7
AA7
A
168 184Right-handed alpha
Helix 8
AA8
A
195 209Right-handed alpha
Helix 9
AA9
A
225 234Right-handed alpha
Helix 10
AB1
A
247 260Right-handed alpha
Helix 11
AB2
A
278 297Right-handed alpha
Helix 12
AB3
B
12 29Right-handed alpha
Helix 13
AB4
B
41 55Right-handed alpha
Helix 14
AB5
B
70 80Right-handed alpha
Helix 15
AB6
B
95 99Right-handed 310
Helix 16
AB7
B
106 122Right-handed alpha
Helix 17
AB8
B
137 152Right-handed alpha
Helix 18
AB9
B
168 184Right-handed alpha
Helix 19
AC1
B
195 209Right-handed alpha
Helix 20
AC2
B
225 234Right-handed alpha
Helix 21
AC3
B
247 260Right-handed alpha
Helix 22
AC4
B
278 297Right-handed alpha
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There are 4 sheets in PDB entry 5OCP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
2 7parallel
Strand 3
A
59 62parallel
Strand 4
A
84 87parallel
Strand 5
A
101 104parallel
Strand 6
A
268 270parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 164first strand
Strand 2
A
126 132parallel
Strand 3
A
190 193parallel
Strand 4
A
218 223parallel
Strand 5
A
239 242parallel
Strand 6
A
275 277anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 37first strand
Strand 2
B
2 7parallel
Strand 3
B
59 62parallel
Strand 4
B
84 87parallel
Strand 5
B
101 104parallel
Strand 6
B
268 270parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 164first strand
Strand 2
B
126 132parallel
Strand 3
B
190 193parallel
Strand 4
B
218 223parallel
Strand 5
B
239 242parallel
Strand 6
B
275 277anti-parallel
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