Analysis of interatomic Contacts of Structural Units in PDB entry:
5OCQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OCQ entry

There are 2 chains in PDB entry 5OCQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 27VAL 297
B
 MET 28HIS 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5OCQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 46Right-handed 310
Helix 2
AA2
A
97 100Right-handed 310
Helix 3
AA3
A
200 205Right-handed alpha
Helix 4
AA4
B
43 46Right-handed 310
Helix 5
AA5
B
97 100Right-handed 310
Helix 6
AA6
B
200 205Right-handed alpha
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There are 10 sheets in PDB entry 5OCQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
284 296anti-parallel
Strand 3
A
80 96anti-parallel
Strand 4
A
74 77anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
101 112parallel
Strand 3
A
80 96anti-parallel
Strand 4
A
284 296anti-parallel
Strand 5
A
124 131anti-parallel
Strand 6
A
219 225anti-parallel
Strand 7
A
229 234anti-parallel
Strand 8
A
237 243anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
114 117anti-parallel
Strand 3
A
252 259anti-parallel
Strand 4
A
139 146anti-parallel
Strand 5
A
159 168anti-parallel
Strand 6
A
182 188anti-parallel
Strand 7
A
191 195anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
207 209anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
270 273anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 41first strand
Strand 2
B
284 299anti-parallel
Strand 3
B
80 96anti-parallel
Strand 4
B
74 77anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 69first strand
Strand 2
B
101 112parallel
Strand 3
B
80 96anti-parallel
Strand 4
B
284 299anti-parallel
Strand 5
B
124 131anti-parallel
Strand 6
B
219 225anti-parallel
Strand 7
B
229 234anti-parallel
Strand 8
B
237 243anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 58first strand
Strand 2
B
114 121anti-parallel
Strand 3
B
251 259anti-parallel
Strand 4
B
139 146anti-parallel
Strand 5
B
159 168anti-parallel
Strand 6
B
182 188anti-parallel
Strand 7
B
191 195anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 179first strand
Strand 2
B
207 209anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 267first strand
Strand 2
B
270 273anti-parallel
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