Analysis of interatomic Contacts of Structural Units in PDB entry:
5OCR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OCR entry

There are 4 chains in PDB entry 5OCR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 30	SER 307
B	GLN 30	SER 307
C	GLN 30	SER 307
D	GLN 30	SER 307

There are 28 helices in PDB entry 5OCR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	49	Right-handed 310
Helix 2	AA2	A	77	81	Right-handed alpha
Helix 3	AA3	A	97	100	Right-handed 310
Helix 4	AA4	A	203	208	Right-handed alpha
Helix 5	AA5	A	278	281	Right-handed 310
Helix 6	AA6	A	282	289	Right-handed alpha
Helix 7	AA7	A	290	292	Right-handed 310
Helix 8	AA8	B	46	49	Right-handed 310
Helix 9	AA9	B	77	81	Right-handed alpha
Helix 10	AB1	B	97	100	Right-handed 310
Helix 11	AB2	B	203	208	Right-handed alpha
Helix 12	AB3	B	278	281	Right-handed 310
Helix 13	AB4	B	282	289	Right-handed alpha
Helix 14	AB5	B	290	292	Right-handed 310
Helix 15	AB6	C	46	49	Right-handed 310
Helix 16	AB7	C	77	81	Right-handed alpha
Helix 17	AB8	C	97	100	Right-handed 310
Helix 18	AB9	C	203	208	Right-handed alpha
Helix 19	AC1	C	278	281	Right-handed 310
Helix 20	AC2	C	282	289	Right-handed alpha
Helix 21	AC3	C	290	292	Right-handed 310
Helix 22	AC4	D	46	49	Right-handed 310
Helix 23	AC5	D	77	81	Right-handed alpha
Helix 24	AC6	D	97	100	Right-handed 310
Helix 25	AC7	D	203	208	Right-handed alpha
Helix 26	AC8	D	278	281	Right-handed 310
Helix 27	AC9	D	282	289	Right-handed alpha
Helix 28	AD1	D	290	292	Right-handed 310

There are 24 sheets in PDB entry 5OCR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	A	294	306	anti-parallel
Strand 3	A	88	95	anti-parallel
Strand 4	A	82	85	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	107	109	parallel
Strand 3	A	88	95	anti-parallel
Strand 4	A	294	306	anti-parallel
Strand 5	A	121	128	anti-parallel
Strand 6	A	221	228	anti-parallel
Strand 7	A	232	237	anti-parallel
Strand 8	A	240	246	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	118	first strand
Strand 2	A	254	262	anti-parallel
Strand 3	A	136	143	anti-parallel
Strand 4	A	155	165	anti-parallel
Strand 5	A	185	191	anti-parallel
Strand 6	A	194	198	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	118	first strand
Strand 2	A	254	262	anti-parallel
Strand 3	A	136	143	anti-parallel
Strand 4	A	155	165	anti-parallel
Strand 5	A	180	182	anti-parallel
Strand 6	A	210	212	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	174	175	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	270	first strand
Strand 2	A	273	276	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	44	first strand
Strand 2	B	294	306	anti-parallel
Strand 3	B	88	95	anti-parallel
Strand 4	B	82	85	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	107	109	parallel
Strand 3	B	88	95	anti-parallel
Strand 4	B	294	306	anti-parallel
Strand 5	B	121	128	anti-parallel
Strand 6	B	221	228	anti-parallel
Strand 7	B	232	237	anti-parallel
Strand 8	B	240	246	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	118	first strand
Strand 2	B	254	262	anti-parallel
Strand 3	B	136	143	anti-parallel
Strand 4	B	155	165	anti-parallel
Strand 5	B	185	191	anti-parallel
Strand 6	B	194	198	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	118	first strand
Strand 2	B	254	262	anti-parallel
Strand 3	B	136	143	anti-parallel
Strand 4	B	155	165	anti-parallel
Strand 5	B	180	182	anti-parallel
Strand 6	B	210	212	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	171	first strand
Strand 2	B	174	175	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	270	first strand
Strand 2	B	273	276	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	C	294	306	anti-parallel
Strand 3	C	88	95	anti-parallel
Strand 4	C	82	85	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	107	109	parallel
Strand 3	C	88	95	anti-parallel
Strand 4	C	294	306	anti-parallel
Strand 5	C	121	128	anti-parallel
Strand 6	C	222	228	anti-parallel
Strand 7	C	232	237	anti-parallel
Strand 8	C	240	246	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	118	first strand
Strand 2	C	254	262	anti-parallel
Strand 3	C	136	143	anti-parallel
Strand 4	C	155	165	anti-parallel
Strand 5	C	185	191	anti-parallel
Strand 6	C	194	198	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	118	first strand
Strand 2	C	254	262	anti-parallel
Strand 3	C	136	143	anti-parallel
Strand 4	C	155	165	anti-parallel
Strand 5	C	180	182	anti-parallel
Strand 6	C	210	212	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	174	175	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	270	first strand
Strand 2	C	273	276	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	44	first strand
Strand 2	D	294	306	anti-parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	82	85	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	76	first strand
Strand 2	D	107	109	parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	294	306	anti-parallel
Strand 5	D	121	128	anti-parallel
Strand 6	D	222	228	anti-parallel
Strand 7	D	232	237	anti-parallel
Strand 8	D	240	246	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	118	first strand
Strand 2	D	254	262	anti-parallel
Strand 3	D	136	143	anti-parallel
Strand 4	D	155	165	anti-parallel
Strand 5	D	185	191	anti-parallel
Strand 6	D	194	198	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	118	first strand
Strand 2	D	254	262	anti-parallel
Strand 3	D	136	143	anti-parallel
Strand 4	D	155	165	anti-parallel
Strand 5	D	180	182	anti-parallel
Strand 6	D	210	212	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	171	first strand
Strand 2	D	174	175	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	270	first strand
Strand 2	D	273	276	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OCR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OCR