Analysis of interatomic Contacts of Structural Units in PDB entry:
5OD2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OD2 entry

There are 3 chains in PDB entry 5OD2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6MET 461
B
 ILE 4MET 461
C
 GLU 6MET 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 5OD2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 15Right-handed alpha
Helix 2
AA2
A
34 44Right-handed alpha
Helix 3
AA3
A
46 57Right-handed alpha
Helix 4
AA4
A
63 78Right-handed alpha
Helix 5
AA5
A
88 97Right-handed alpha
Helix 6
AA6
A
107 119Right-handed alpha
Helix 7
AA7
A
132 137Right-handed alpha
Helix 8
AA8
A
161 163Right-handed 310
Helix 9
AA9
A
212 217Right-handed alpha
Helix 10
AB1
A
218 225Right-handed alpha
Helix 11
AB2
A
233 237Right-handed 310
Helix 12
AB3
A
246 262Right-handed alpha
Helix 13
AB4
A
278 289Right-handed alpha
Helix 14
AB5
A
290 293Right-handed 310
Helix 15
AB6
A
299 310Right-handed alpha
Helix 16
AB7
A
312 323Right-handed alpha
Helix 17
AB8
A
324 339Right-handed alpha
Helix 18
AB9
A
364 386Right-handed alpha
Helix 19
AC1
A
390 392Right-handed 310
Helix 20
AC2
A
393 400Right-handed alpha
Helix 21
AC3
A
405 415Right-handed alpha
Helix 22
AC4
A
439 461Right-handed alpha
Helix 23
AC5
B
5 15Right-handed alpha
Helix 24
AC6
B
34 44Right-handed alpha
Helix 25
AC7
B
46 57Right-handed alpha
Helix 26
AC8
B
63 78Right-handed alpha
Helix 27
AC9
B
88 97Right-handed alpha
Helix 28
AD1
B
107 119Right-handed alpha
Helix 29
AD2
B
132 137Right-handed alpha
Helix 30
AD3
B
161 163Right-handed 310
Helix 31
AD4
B
212 217Right-handed alpha
Helix 32
AD5
B
218 225Right-handed alpha
Helix 33
AD6
B
233 237Right-handed 310
Helix 34
AD7
B
246 262Right-handed alpha
Helix 35
AD8
B
278 289Right-handed alpha
Helix 36
AD9
B
290 293Right-handed 310
Helix 37
AE1
B
299 310Right-handed alpha
Helix 38
AE2
B
312 323Right-handed alpha
Helix 39
AE3
B
324 339Right-handed alpha
Helix 40
AE4
B
364 386Right-handed alpha
Helix 41
AE5
B
390 392Right-handed 310
Helix 42
AE6
B
393 400Right-handed alpha
Helix 43
AE7
B
405 415Right-handed alpha
Helix 44
AE8
B
439 461Right-handed alpha
Helix 45
AE9
C
7 15Right-handed alpha
Helix 46
AF1
C
34 44Right-handed alpha
Helix 47
AF2
C
46 57Right-handed alpha
Helix 48
AF3
C
63 78Right-handed alpha
Helix 49
AF4
C
88 97Right-handed alpha
Helix 50
AF5
C
107 119Right-handed alpha
Helix 51
AF6
C
132 137Right-handed alpha
Helix 52
AF7
C
161 163Right-handed 310
Helix 53
AF8
C
212 217Right-handed alpha
Helix 54
AF9
C
218 225Right-handed alpha
Helix 55
AG1
C
233 237Right-handed 310
Helix 56
AG2
C
246 262Right-handed alpha
Helix 57
AG3
C
278 289Right-handed alpha
Helix 58
AG4
C
290 293Right-handed 310
Helix 59
AG5
C
299 310Right-handed alpha
Helix 60
AG6
C
312 323Right-handed alpha
Helix 61
AG7
C
324 339Right-handed alpha
Helix 62
AG8
C
364 386Right-handed alpha
Helix 63
AG9
C
390 392Right-handed 310
Helix 64
AH1
C
393 400Right-handed alpha
Helix 65
AH2
C
405 415Right-handed alpha
Helix 66
AH3
C
439 461Right-handed alpha
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There are 9 sheets in PDB entry 5OD2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 159first strand
Strand 2
A
145 151anti-parallel
Strand 3
A
123 127parallel
Strand 4
A
18 22parallel
Strand 5
A
228 231parallel
Strand 6
A
268 272parallel
Strand 7
A
295 298parallel
Strand 8
A
344 349parallel
Strand 9
A
352 358anti-parallel
Strand 10
A
421 427anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
196 201parallel
Strand 3
A
171 177anti-parallel
Strand 4
A
26 32parallel
Strand 5
A
102 106anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
188 191anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 159first strand
Strand 2
B
145 151anti-parallel
Strand 3
B
123 127parallel
Strand 4
B
18 22parallel
Strand 5
B
228 231parallel
Strand 6
B
268 272parallel
Strand 7
B
295 298parallel
Strand 8
B
344 348parallel
Strand 9
B
352 358anti-parallel
Strand 10
B
421 427anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 84first strand
Strand 2
B
196 201parallel
Strand 3
B
171 177anti-parallel
Strand 4
B
26 32parallel
Strand 5
B
102 106anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 185first strand
Strand 2
B
188 191anti-parallel
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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
154 159first strand
Strand 2
C
145 151anti-parallel
Strand 3
C
123 126parallel
Strand 4
C
18 22parallel
Strand 5
C
228 231parallel
Strand 6
C
268 272parallel
Strand 7
C
295 298parallel
Strand 8
C
344 349parallel
Strand 9
C
352 358anti-parallel
Strand 10
C
421 427anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 84first strand
Strand 2
C
196 201parallel
Strand 3
C
171 177anti-parallel
Strand 4
C
26 32parallel
Strand 5
C
102 106anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
182 185first strand
Strand 2
C
188 191anti-parallel
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