Analysis of interatomic Contacts of Structural Units in PDB entry:
5ODE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ODE entry

There are 2 chains in PDB entry 5ODE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2PRO 324
B
 SER -1ALA 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5ODE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 14Right-handed alpha
Helix 2
AA2
A
24 37Right-handed alpha
Helix 3
AA3
A
49 54Right-handed alpha
Helix 4
AA4
A
66 81Right-handed alpha
Helix 5
AA5
A
136 144Right-handed alpha
Helix 6
AA6
A
151 156Right-handed alpha
Helix 7
AA7
A
157 160Right-handed 310
Helix 8
AA8
A
171 175Right-handed 310
Helix 9
AA9
A
176 181Right-handed alpha
Helix 10
AB1
A
198 209Right-handed alpha
Helix 11
AB2
A
285 288Right-handed 310
Helix 12
AB3
A
293 314Right-handed alpha
Helix 13
AB4
B
7 14Right-handed alpha
Helix 14
AB5
B
24 37Right-handed alpha
Helix 15
AB6
B
49 54Right-handed alpha
Helix 16
AB7
B
66 81Right-handed alpha
Helix 17
AB8
B
136 142Right-handed alpha
Helix 18
AB9
B
151 156Right-handed alpha
Helix 19
AC1
B
157 160Right-handed 310
Helix 20
AC2
B
171 175Right-handed 310
Helix 21
AC3
B
176 181Right-handed alpha
Helix 22
AC4
B
198 209Right-handed alpha
Helix 23
AC5
B
285 288Right-handed 310
Helix 24
AC6
B
293 316Right-handed alpha
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There are 9 sheets in PDB entry 5ODE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
41 45parallel
Strand 3
A
15 21parallel
Strand 4
A
115 123parallel
Strand 5
A
100 105anti-parallel
Strand 6
A
89 95anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
41 45parallel
Strand 3
A
15 21parallel
Strand 4
A
115 123parallel
Strand 5
A
281 283parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
249 251anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
242 246parallel
Strand 3
A
164 168parallel
Strand 4
A
187 190parallel
Strand 5
A
212 213parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 223first strand
Strand 2
A
226 232anti-parallel
Strand 3
A
237 239anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 283first strand
Strand 2
B
115 123parallel
Strand 3
B
100 106anti-parallel
Strand 4
B
84 95anti-parallel
Strand 5
B
41 45parallel
Strand 6
B
15 21parallel
Strand 7
B
115 123parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 129first strand
Strand 2
B
249 251anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
242 246parallel
Strand 3
B
164 168parallel
Strand 4
B
187 190parallel
Strand 5
B
212 213parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 222first strand
Strand 2
B
227 232anti-parallel
Strand 3
B
237 239anti-parallel
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