Analysis of interatomic Contacts of Structural Units in PDB entry:
5ODK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ODK entry

There are 3 chains in PDB entry 5ODK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1GLU 178
B
 LEU 0PHE 176
C
 GLY -1PHE 176
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5ODK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-1 4Right-handed alpha
Helix 2
AA2
A
58 75Right-handed alpha
Helix 3
AA3
A
84 88Right-handed 310
Helix 4
AA4
A
100 104Right-handed 310
Helix 5
AA5
A
129 137Right-handed alpha
Helix 6
AA6
B
58 75Right-handed alpha
Helix 7
AA7
B
84 88Right-handed 310
Helix 8
AA8
B
93 97Right-handed alpha
Helix 9
AA9
B
100 104Right-handed 310
Helix 10
AB1
B
129 137Right-handed alpha
Helix 11
AB2
C
58 75Right-handed alpha
Helix 12
AB3
C
84 88Right-handed 310
Helix 13
AB4
C
93 97Right-handed alpha
Helix 14
AB5
C
100 104Right-handed 310
Helix 15
AB6
C
129 137Right-handed alpha
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There are 9 sheets in PDB entry 5ODK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 164first strand
Strand 2
A
145 154anti-parallel
Strand 3
A
21 23anti-parallel
Strand 4
A
13 16anti-parallel
Strand 5
A
6 10anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
47 54anti-parallel
Strand 3
A
106 113anti-parallel
Strand 4
A
90 92anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
166 171parallel
Strand 3
A
142 146anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 164first strand
Strand 2
B
145 154anti-parallel
Strand 3
B
21 23anti-parallel
Strand 4
B
13 16anti-parallel
Strand 5
B
6 10anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
47 54anti-parallel
Strand 3
B
106 113anti-parallel
Strand 4
B
90 92anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 120first strand
Strand 2
B
166 171parallel
Strand 3
B
142 146anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 164first strand
Strand 2
C
145 154anti-parallel
Strand 3
C
21 23anti-parallel
Strand 4
C
13 16anti-parallel
Strand 5
C
6 10anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 29first strand
Strand 2
C
47 54anti-parallel
Strand 3
C
106 113anti-parallel
Strand 4
C
90 92anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 120first strand
Strand 2
C
166 171parallel
Strand 3
C
142 146anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il