Analysis of interatomic Contacts of Structural Units in PDB entry:
5ODN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ODN entry

There are 16 chains in PDB entry 5ODN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 0	LEU 108
B	MET 1	ASP 109
C	GLY -1	LEU 108
D	ASN -6	LEU 108
E	MET 1	ASP 109
F	MET 1	ASP 109
G	MET 1	LEU 108
H	ALA 0	LEU 108
I	T 1	T 4
M	T 1	T 4
J	T 1	T 4
K	T 1	T 4
N	T 1	T 4
P	T 1	T 3
Q	T 1	T 4
L	T 1	T 3

There are 8 helices in PDB entry 5ODN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	70	Right-handed alpha
Helix 2	AA2	B	60	70	Right-handed alpha
Helix 3	AA3	C	60	70	Right-handed alpha
Helix 4	AA4	D	60	70	Right-handed alpha
Helix 5	AA5	E	60	70	Right-handed alpha
Helix 6	AA6	F	60	70	Right-handed alpha
Helix 7	AA7	G	60	70	Right-handed alpha
Helix 8	AA8	H	60	70	Right-handed alpha

There are 17 sheets in PDB entry 5ODN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	13	first strand
Strand 2	A	75	88	anti-parallel
Strand 3	A	94	107	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	22	first strand
Strand 2	A	28	37	anti-parallel
Strand 3	A	51	59	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	13	first strand
Strand 2	B	75	87	anti-parallel
Strand 3	B	95	102	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	22	first strand
Strand 2	B	28	41	anti-parallel
Strand 3	B	47	59	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	79	first strand
Strand 2	B	104	109	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	13	first strand
Strand 2	C	75	88	anti-parallel
Strand 3	C	94	106	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	22	first strand
Strand 2	C	28	38	anti-parallel
Strand 3	C	50	59	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	13	first strand
Strand 2	D	75	88	anti-parallel
Strand 3	D	94	107	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	22	first strand
Strand 2	D	28	38	anti-parallel
Strand 3	D	50	59	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	13	first strand
Strand 2	E	75	87	anti-parallel
Strand 3	E	95	107	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	22	first strand
Strand 2	E	28	41	anti-parallel
Strand 3	E	47	59	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	13	first strand
Strand 2	F	75	88	anti-parallel
Strand 3	F	94	107	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	22	first strand
Strand 2	F	28	40	anti-parallel
Strand 3	F	48	59	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	13	first strand
Strand 2	G	75	87	anti-parallel
Strand 3	G	95	107	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	22	first strand
Strand 2	G	28	41	anti-parallel
Strand 3	G	47	59	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	13	first strand
Strand 2	H	75	88	anti-parallel
Strand 3	H	94	107	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	22	first strand
Strand 2	H	28	37	anti-parallel
Strand 3	H	51	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ODN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ODN