Analysis of interatomic Contacts of Structural Units in PDB entry:
5ODO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ODO entry

There are 2 chains in PDB entry 5ODO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6ARG 559
B
 LEU 5ARG 559
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 5ODO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
32 34Right-handed 310
Helix 3
AA3
A
83 91Right-handed alpha
Helix 4
AA4
A
102 113Right-handed alpha
Helix 5
AA5
A
142 155Right-handed alpha
Helix 6
AA6
A
156 164Right-handed 310
Helix 7
AA7
A
167 172Right-handed alpha
Helix 8
AA8
A
175 180Right-handed 310
Helix 9
AA9
A
181 192Right-handed alpha
Helix 10
AB1
A
198 209Right-handed alpha
Helix 11
AB2
A
209 214Right-handed alpha
Helix 12
AB3
A
228 233Right-handed alpha
Helix 13
AB4
A
233 244Right-handed alpha
Helix 14
AB5
A
321 323Right-handed 310
Helix 15
AB6
A
324 331Right-handed alpha
Helix 16
AB7
A
340 345Right-handed alpha
Helix 17
AB8
A
346 351Right-handed alpha
Helix 18
AB9
A
362 372Right-handed alpha
Helix 19
AC1
A
427 431Right-handed 310
Helix 20
AC2
A
432 448Right-handed alpha
Helix 21
AC3
A
451 456Right-handed alpha
Helix 22
AC4
A
456 463Right-handed alpha
Helix 23
AC5
A
476 480Right-handed 310
Helix 24
AC6
A
514 531Right-handed alpha
Helix 25
AC7
A
533 537Right-handed 310
Helix 26
AC8
A
542 545Right-handed 310
Helix 27
AC9
A
546 557Right-handed alpha
Helix 28
AD1
B
15 28Right-handed alpha
Helix 29
AD2
B
32 34Right-handed 310
Helix 30
AD3
B
83 91Right-handed alpha
Helix 31
AD4
B
102 114Right-handed alpha
Helix 32
AD5
B
142 155Right-handed alpha
Helix 33
AD6
B
156 164Right-handed 310
Helix 34
AD7
B
167 172Right-handed alpha
Helix 35
AD8
B
175 180Right-handed 310
Helix 36
AD9
B
181 192Right-handed alpha
Helix 37
AE1
B
198 209Right-handed alpha
Helix 38
AE2
B
209 214Right-handed alpha
Helix 39
AE3
B
228 233Right-handed alpha
Helix 40
AE4
B
233 244Right-handed alpha
Helix 41
AE5
B
321 323Right-handed 310
Helix 42
AE6
B
324 331Right-handed alpha
Helix 43
AE7
B
340 345Right-handed alpha
Helix 44
AE8
B
346 351Right-handed alpha
Helix 45
AE9
B
362 372Right-handed alpha
Helix 46
AF1
B
427 431Right-handed 310
Helix 47
AF2
B
432 448Right-handed alpha
Helix 48
AF3
B
451 456Right-handed alpha
Helix 49
AF4
B
456 463Right-handed alpha
Helix 50
AF5
B
476 480Right-handed 310
Helix 51
AF6
B
514 531Right-handed alpha
Helix 52
AF7
B
533 537Right-handed 310
Helix 53
AF8
B
542 545Right-handed 310
Helix 54
AF9
B
546 557Right-handed alpha
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There are 6 sheets in PDB entry 5ODO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
36 39parallel
Strand 3
A
9 12parallel
Strand 4
A
293 296parallel
Strand 5
A
498 500parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
122 124anti-parallel
Strand 3
A
381 383parallel
Strand 4
A
390 393anti-parallel
Strand 5
A
408 414anti-parallel
Strand 6
A
352 359anti-parallel
Strand 7
A
464 472anti-parallel
Strand 8
A
306 307anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 259first strand
Strand 2
A
270 277anti-parallel
Strand 3
A
283 287anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 249first strand
Strand 2
B
36 39parallel
Strand 3
B
9 12parallel
Strand 4
B
293 296parallel
Strand 5
B
498 500parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
122 124anti-parallel
Strand 3
B
381 383parallel
Strand 4
B
390 393anti-parallel
Strand 5
B
408 414anti-parallel
Strand 6
B
352 359anti-parallel
Strand 7
B
464 472anti-parallel
Strand 8
B
306 307anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 259first strand
Strand 2
B
270 277anti-parallel
Strand 3
B
283 287anti-parallel
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